BioC 2.12: CHECK report for iPAC on moscato2

Package: iPAC

Version: 1.4.2

Command: rm -rf iPAC.buildbin-libdir && mkdir iPAC.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=iPAC.buildbin-libdir iPAC_1.4.2.tar.gz >iPAC-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=iPAC.buildbin-libdir --install="check:iPAC-install.out" --force-multiarch --no-vignettes --timings iPAC_1.4.2.tar.gz && mv iPAC.buildbin-libdir/* iPAC.Rcheck/ && rmdir iPAC.buildbin-libdir

StartedAt: 2013-10-09 02:43:26 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 03:06:28 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 1381.8 seconds

RetCode: 0

Status:  OK

CheckDir: iPAC.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/iPAC.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'iPAC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'iPAC' version '1.4.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'iPAC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [436s] OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
ClusterFind          262.68   0.67  264.11
get.Positions         74.59   5.25   82.26
nmc                   49.98   0.00   49.98
Plot.Protein.Linear   17.36   0.34   18.42
get.AlignedPositions   9.20   0.03    9.92
get.Remapped.Order     4.54   0.18    5.41
** running examples for arch 'x64' ... [13m] OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
get.Positions        301.11  19.82  323.61
ClusterFind          307.85   1.66  310.25
nmc                   56.89   0.00   56.89
Plot.Protein.Linear   51.08   1.14   52.92
get.AlignedPositions  39.33   0.64   40.81
get.Remapped.Order    11.79   0.28   12.78
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'iPAC' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'iPAC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iPAC' as iPAC_1.4.2.zip
* DONE (iPAC)