iBBiG 1.4.0
Aedin Culhane
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/iBBiG | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | [ OK ] | OK |
* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/iBBiG.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'iBBiG/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'iBBiG' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'iBBiG' can be installed ... [4s/5s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [368s/378s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
iBBiG-package 125.323 0.686 129.047
iBBiG 119.055 0.622 122.668
iBBiG-class 118.628 0.633 123.345
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package 'iBBiG' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c R_init_iBBiG.c -o R_init_iBBiG.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c iBBiG.c -o iBBiG.o
iBBiG.c:105:31: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
sortedPop[j*noPop+i]=pop[j*noPop+order[i]];
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iBBiG.c:166:37: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int mutThreshold=(double)RAND_MAX*mutation;
˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
iBBiG.c:252:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
poolPop[poolIndex] = malloc(sizeof(int) * noCov);
˜ ^˜˜˜˜
iBBiG.c:183:22: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
child[i]=pop[i*noPop+par1];
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iBBiG.c:193:22: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
child[i]=pop[i*noPop+par2];
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iBBiG.c:206:22: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
child[i]=pop[i*noPop+par1];
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iBBiG.c:213:22: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
child[i]=pop[i*noPop+par2];
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iBBiG.c:300:22: warning: implicit declaration of function 'time' is invalid in C99 [-Wimplicit-function-declaration]
srand((unsigned)time(NULL));
^
iBBiG.c:353:17: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
group[i]=pop[(i+1)*(*noPop)-1];
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
9 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o iBBiG.so R_init_iBBiG.o iBBiG.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/iBBiG.Rcheck/iBBiG/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (iBBiG)