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BioC 2.12: BUILD report for geneplotter on moscato2

This page was generated on 2013-10-09 09:38:02 -0700 (Wed, 09 Oct 2013).

Package 258/671HostnameOS / ArchBUILDCHECKBUILD BIN
geneplotter 1.38.0
Bioconductor Package Maintainer
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/geneplotter
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ ERROR ] skipped  skipped 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: geneplotter
Version: 1.38.0
Command: chmod a+r geneplotter -R && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data geneplotter
StartedAt: 2013-10-08 23:24:10 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 23:25:47 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 97.5 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'geneplotter/DESCRIPTION' ... OK
* preparing 'geneplotter':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: AnnotationDbi
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from 'package:stats':

    xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, as.data.frame,
    cbind, colnames, duplicated, eval, get, intersect, lapply, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rep.int, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unlist

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: org.Hs.eg.db
Loading required package: DBI


Loading required package: lattice
Warning: running command '"C:\PROGRA˜2\MIKTEX˜1.9\miktex\bin\texi2dvi.exe" --quiet --pdf "byChroms.tex"  -I "E:/biocbld/bbs-2.12-bioc/R/share/texmf/tex/latex" -I "E:/biocbld/bbs-2.12-bioc/R/share/texmf/bibtex/bst"' had status 1
Error in find_vignette_product(name, by = "texi2pdf", engine = engine) : 
  Failed to locate the 'texi2pdf' output file (by engine 'utils::Sweave') for vignette with name 'byChroms'. The following files exists in directory '.': 'byChroms-cPlot.pdf', 'byChroms.Rnw', 'byChroms.tex', 'visualize.Rnw'
Calls: <Anonymous> -> find_vignette_product
Execution halted