Package: flowUtils

Version: 1.19.1

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings flowUtils_1.19.1.tar.gz

StartedAt: 2013-01-16 02:33:07 -0800 (Wed, 16 Jan 2013)

EndedAt: 2013-01-16 02:34:36 -0800 (Wed, 16 Jan 2013)

EllapsedTime: 89.3 seconds

RetCode: 0

Status:  OK

CheckDir: flowUtils.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/flowUtils.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowUtils/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowUtils’ version ‘1.19.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowUtils’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
testGatingCompliance: warning in defineTestSuite("GatingTestSuite", dir
  = system.file("RUnitScript_Files", package = "flowUtils"),
  testFileRegexp = "^runit.+\\.[rR]$", testFuncRegexp = "^test.+"):
  partial argument match of 'dir' to 'dirs'
testGatingCompliance: warning in printHTMLProtocol(testResult, file =
  paste(file, ".html", sep = "")): partial argument match of 'file' to
  'fileName'
xmlEllipsoidGateNode: no visible global function definition for
  ‘xmlFociNode’
xmlEllipsoidGateNode: no visible global function definition for
  ‘xmlEdgeNode’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/flowUtils.Rcheck/00check.log’
for details.

* installing *source* package ‘flowUtils’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (flowUtils)

name	user	system	elapsed
read.gatingML	0.508	0.016	0.557
testGatingCompliance	0.176	0.000	0.177