flagme 1.16.1
Mark Robinson
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/flagme | | Last Changed Rev: 75695 / Revision: 76155 | | Last Changed Date: 2013-04-16 05:37:24 -0700 (Tue, 16 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flagme.buildbin-libdir flagme_1.16.1.tar.gz'
>>>>>>>
* installing *source* package 'flagme' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c dp.c -o dp.o
dp.c:19:27: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, ind, nc1 = *nc1_, nc2=*nc2_, df=*df_, w=*w_, n=(w-1)/2;
˜˜˜ ^˜˜˜˜
dp.c:19:38: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, ind, nc1 = *nc1_, nc2=*nc2_, df=*df_, w=*w_, n=(w-1)/2;
˜˜˜ ^˜˜˜˜
dp.c:19:48: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, ind, nc1 = *nc1_, nc2=*nc2_, df=*df_, w=*w_, n=(w-1)/2;
˜˜ ^˜˜˜
dp.c:19:56: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, ind, nc1 = *nc1_, nc2=*nc2_, df=*df_, w=*w_, n=(w-1)/2;
˜ ^˜˜
dp.c:70:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
x1sq = (double *) R_alloc(nc1, sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
dp.c:71:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
x2sq = (double *) R_alloc(nc2, sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
dp.c:54:34: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, hi, lo, ind, nr = *nr_, nc1 = *nc1_, nc2=*nc2_, df=*df_;
˜˜ ^˜˜˜
dp.c:54:46: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, hi, lo, ind, nr = *nr_, nc1 = *nc1_, nc2=*nc2_, df=*df_;
˜˜˜ ^˜˜˜˜
dp.c:54:57: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, hi, lo, ind, nr = *nr_, nc1 = *nc1_, nc2=*nc2_, df=*df_;
˜˜˜ ^˜˜˜˜
dp.c:54:67: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, hi, lo, ind, nr = *nr_, nc1 = *nc1_, nc2=*nc2_, df=*df_;
˜˜ ^˜˜˜
dp.c:121:20: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, n = *n_, count=0;
˜ ^˜˜
dp.c:168:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
x1sq = (double *) R_alloc(nc1, sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
dp.c:169:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
x2sq = (double *) R_alloc(nc2, sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
dp.c:161:34: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, hi, lo, ind, nr = *nr_, nc1 = *nc1_, nc2=*nc2_, df=*df_;
˜˜ ^˜˜˜
dp.c:161:46: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, hi, lo, ind, nr = *nr_, nc1 = *nc1_, nc2=*nc2_, df=*df_;
˜˜˜ ^˜˜˜˜
dp.c:161:57: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, hi, lo, ind, nr = *nr_, nc1 = *nc1_, nc2=*nc2_, df=*df_;
˜˜˜ ^˜˜˜˜
dp.c:161:67: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i, j, k, hi, lo, ind, nr = *nr_, nc1 = *nc1_, nc2=*nc2_, df=*df_;
˜˜ ^˜˜˜
dp.c:217:15: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i,j, nr=*nr_, nc=*nc_, tb, count=0, done=0;
˜˜ ^˜˜˜
dp.c:217:24: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int i,j, nr=*nr_, nc=*nc_, tb, count=0, done=0;
˜˜ ^˜˜˜
19 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c init.c -o init.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o flagme.so dp.o init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/flagme.buildbin-libdir/flagme/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'flagme'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flagme)
>>>>>>>
>>>>>>> FIXING LINKS FOR flagme.buildbin-libdir/flagme/libs//flagme.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "flagme.buildbin-libdir/flagme/libs//flagme.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "flagme.buildbin-libdir/flagme/libs//flagme.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "flagme.buildbin-libdir/flagme/libs//flagme.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "flagme.buildbin-libdir/flagme/libs//flagme.so"