BioC 2.12: CHECK report for aroma.light on moscato2

Package: aroma.light

Version: 1.30.5

Command: rm -rf aroma.light.buildbin-libdir && mkdir aroma.light.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=aroma.light.buildbin-libdir aroma.light_1.30.5.tar.gz >aroma.light-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=aroma.light.buildbin-libdir --install="check:aroma.light-install.out" --force-multiarch --no-vignettes --timings aroma.light_1.30.5.tar.gz && mv aroma.light.buildbin-libdir/* aroma.light.Rcheck/ && rmdir aroma.light.buildbin-libdir

StartedAt: 2013-10-09 01:01:01 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 01:03:39 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 158.5 seconds

RetCode: 0

Status: OK

CheckDir: aroma.light.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/aroma.light.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'aroma.light/DESCRIPTION' ... OK
* this is package 'aroma.light' version '1.30.5'
* package encoding: latin1
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  inst/rsp/.rspPlugins
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'aroma.light' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [51s] OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
normalizeAffine.matrix   20.62   0.04   20.67
normalizeCurveFit.matrix 20.06   0.02   20.08
** running examples for arch 'x64' ... [49s] OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
normalizeAffine.matrix   20.53   0.00   20.53
normalizeCurveFit.matrix 18.49   0.03   18.52
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-bioc/meat/aroma.light.Rcheck/00check.log'
for details.

BioC 2.12: CHECK report for aroma.light on moscato2

Summary

Command output