BioC 2.12: CHECK report for RDRToolbox on george2

Package: RDRToolbox

Version: 1.10.0

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings RDRToolbox_1.10.0.tar.gz

StartedAt: 2013-10-09 04:24:33 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 04:25:49 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 76.5 seconds

RetCode: 0

Status:  OK

CheckDir: RDRToolbox.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/RDRToolbox.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RDRToolbox/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RDRToolbox’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RDRToolbox’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [45s/47s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
plotDR       18.589  0.076  20.475
Isomap       13.344  0.088  13.466
LLE           6.929  0.032   7.047
generateData  5.164  0.000   5.174
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/RDRToolbox.Rcheck/00check.log’
for details.

* installing *source* package ‘RDRToolbox’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RDRToolbox)

name	user	system	elapsed
DBIndex	0.024	0.004	0.031
Isomap	13.344	0.088	13.466
LLE	6.929	0.032	7.047
SwissRoll	0.008	0.000	0.007
generateData	5.164	0.000	5.174
plotDR	18.589	0.076	20.475