BioC 2.12: CHECK report for OSAT on petty

Package: OSAT

Version: 1.8.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch OSAT_1.8.1.tar.gz

StartedAt: 2013-10-08 23:20:40 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 23:21:46 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 65.5 seconds

RetCode: 0

Status:  OK

CheckDir: OSAT.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/OSAT.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'OSAT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'OSAT' version '1.8.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'OSAT' can be installed ... [3s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [21s/23s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
optimal.block 4.779   0.02   5.187
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'OSAT' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (OSAT)

name	user	system	elapsed
BeadChip-class	0.033	0.002	0.039
BeadPlate-class	0.025	0.001	0.025
MSAroboticPlate-class	0.898	0.031	1.000
QC	3.427	0.034	3.781
create.optimized.setup	3.438	0.021	3.525
example.setup	0.103	0.006	0.110
gContainer-class	0.062	0.002	0.064
gExperimentSetup-class	0.244	0.007	0.255
gSample-class	0.049	0.002	0.051
gSlide-class	0.013	0.001	0.013
get.experiment.setup	3.418	0.016	3.637
multi.barplot	0.041	0.002	0.045
multi.chisq.test	0.039	0.001	0.042
optimal.block	4.779	0.020	5.187
optimal.shuffle	3.472	0.012	3.537