HilbertVisGUI 1.18.0
Simon Anders
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/HilbertVisGUI | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | WARNINGS | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | WARNINGS | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | [ WARNINGS ] | OK |
* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/HilbertVisGUI.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'HilbertVisGUI/DESCRIPTION' ... OK
* this is package 'HilbertVisGUI' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'HilbertVisGUI' can be installed ... [18s/23s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... WARNING
File '/Users/biocbuild/bbs-2.12-bioc/meat/HilbertVisGUI.Rcheck/HilbertVisGUI/libs/HilbertVisGUI.so':
Found '_abort', possibly from 'abort' (C)
Object: 'display.o'
File '/Users/biocbuild/bbs-2.12-bioc/meat/HilbertVisGUI.Rcheck/HilbertVisGUI/libs/HilbertVisGUI.so':
Found non-API call to R: 'getInputHandler'
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console.
Compiled code should not call non-API entry points in R.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking examples ... [1s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
See
'/Users/biocbuild/bbs-2.12-bioc/meat/HilbertVisGUI.Rcheck/00check.log'
for details.
* installing *source* package 'HilbertVisGUI' ...
-n Checking for pkg-config...
/usr/bin/pkg-config
-n Checking for gtkmm-2.4...
found: version 2.24.2
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c R_env_prot.c -o R_env_prot.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c R_interface.cc -o R_interface.o
In file included from R_interface.cc:8:
In file included from ./display.h:7:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm.h:29:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm/gc.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm/drawable.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/pangomm-1.4/pangomm/layout.h:35:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/pangomm-1.4/pangomm/context.h:42:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/context.h:27:
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/pattern.h:35:1: warning: struct 'Matrix' was previously declared as a class [-Wmismatched-tags]
struct Matrix;
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/matrix.h:50:7: note: previous use is here
class Matrix : public cairo_matrix_t
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/pattern.h:35:1: note: did you mean class here?
struct Matrix;
^˜˜˜˜˜
class
In file included from R_interface.cc:8:
In file included from ./display.h:7:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm.h:150:
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm/statusicon.h:237:38: warning: extra ';' inside a class [-Wextra-semi]
Glib::RefPtr<Gio::Icon> get_icon();;
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm/statusicon.h:239:50: warning: extra ';' inside a class [-Wextra-semi]
Glib::RefPtr<const Gio::Icon> get_icon() const;;
^
In file included from R_interface.cc:8:
./display.h:14:16: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
coord hilbert( long long t, int lv );
^
./display.h:73:4: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
long long get_begin( void ) const;
^
./display.h:108:8: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
inline long long HilbertCurveDisplay::get_begin( void ) const
^
./display.h:113:12: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
return (long long) zoom_offset << ( 2 * (canvas_size_level-pixel_size_level) );
^
R_interface.cc:494:93: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
std::vector< Gdk::Color > * palette = new std::vector< Gdk::Color >( Rf_length(paletteR) / 3 );
˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
R_interface.cc:499:101: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
std::vector< Gdk::Color > * palette_neg = new std::vector< Gdk::Color >( Rf_length(palette_negR) / 3 );
˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
R_interface.cc:511:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
(*palette_steps)[i] = REAL( max_palette_valueR )[ 0 ] / palette->size() * (i+1);
˜ ^
R_interface.cc:523:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
delete (*dataCols)[j];
˜ ^
R_interface.cc:548:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
delete (*dataCols)[j];
˜ ^
R_interface.cc:509:11: warning: unused variable 'palette_level' [-Wunused-variable]
double palette_level = log( REAL( max_palette_valueR )[ 0 ] ) / log( 10. ) * 4;
^
R_interface.cc:618:39: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
case 0: INTEGER(a)[0] = 1 + binLo; break;
˜ ˜˜^˜˜˜˜˜˜
R_interface.cc:619:39: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
case 1: INTEGER(a)[0] = 1 + ( binLo + binHi ) / 2; break;
˜ ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_interface.cc:620:39: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
case 2: INTEGER(a)[0] = 1 + binHi; break;
˜ ˜˜^˜˜˜˜˜˜
R_interface.cc:703:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
(*palette_steps)[i] = max_palette_value / palette->size() * (i+1);
˜ ^
17 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c colorizers.cc -o colorizers.o
In file included from colorizers.cc:1:
In file included from ./colorizers.h:6:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm.h:29:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm/gc.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm/drawable.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/pangomm-1.4/pangomm/layout.h:35:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/pangomm-1.4/pangomm/context.h:42:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/context.h:27:
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/pattern.h:35:1: warning: struct 'Matrix' was previously declared as a class [-Wmismatched-tags]
struct Matrix;
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/matrix.h:50:7: note: previous use is here
class Matrix : public cairo_matrix_t
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/pattern.h:35:1: note: did you mean class here?
struct Matrix;
^˜˜˜˜˜
class
In file included from colorizers.cc:1:
In file included from ./colorizers.h:6:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm.h:150:
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm/statusicon.h:237:38: warning: extra ';' inside a class [-Wextra-semi]
Glib::RefPtr<Gio::Icon> get_icon();;
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm/statusicon.h:239:50: warning: extra ';' inside a class [-Wextra-semi]
Glib::RefPtr<const Gio::Icon> get_icon() const;;
^
In file included from colorizers.cc:1:
In file included from ./colorizers.h:7:
./display.h:14:16: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
coord hilbert( long long t, int lv );
^
./display.h:73:4: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
long long get_begin( void ) const;
^
./display.h:108:8: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
inline long long HilbertCurveDisplay::get_begin( void ) const
^
./display.h:113:12: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
return (long long) zoom_offset << ( 2 * (canvas_size_level-pixel_size_level) );
^
7 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c display.cc -o display.o
In file included from display.cc:1:
In file included from ./display.h:7:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm.h:29:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm/gc.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm/drawable.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/pangomm-1.4/pangomm/layout.h:35:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/pangomm-1.4/pangomm/context.h:42:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/context.h:27:
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/pattern.h:35:1: warning: struct 'Matrix' was previously declared as a class [-Wmismatched-tags]
struct Matrix;
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/matrix.h:50:7: note: previous use is here
class Matrix : public cairo_matrix_t
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/pattern.h:35:1: note: did you mean class here?
struct Matrix;
^˜˜˜˜˜
class
In file included from display.cc:1:
In file included from ./display.h:7:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm.h:150:
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm/statusicon.h:237:38: warning: extra ';' inside a class [-Wextra-semi]
Glib::RefPtr<Gio::Icon> get_icon();;
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm/statusicon.h:239:50: warning: extra ';' inside a class [-Wextra-semi]
Glib::RefPtr<const Gio::Icon> get_icon() const;;
^
In file included from display.cc:1:
./display.h:14:16: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
coord hilbert( long long t, int lv );
^
./display.h:73:4: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
long long get_begin( void ) const;
^
./display.h:108:8: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
inline long long HilbertCurveDisplay::get_begin( void ) const
^
./display.h:113:12: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
return (long long) zoom_offset << ( 2 * (canvas_size_level-pixel_size_level) );
^
display.cc:9:16: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
coord hilbert( long long t, int lv )
^
display.cc:11:4: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
long long q, r;
^
display.cc:11:4: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
display.cc:14:14: warning: compound literals are a C99-specific feature [-Wc99-extensions]
return (coord) { 0, 0 };
^
display.cc:16:11: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
r = 1ll << (2*(lv-1));
^
display.cc:20:27: warning: compound literals are a C99-specific feature [-Wc99-extensions]
case 0: { return (coord) { c.y, c.x }; }
^
display.cc:21:27: warning: compound literals are a C99-specific feature [-Wc99-extensions]
case 1: { return (coord) { c.x, c.y + ( 1l << (lv-1) ) }; }
^
display.cc:22:27: warning: compound literals are a C99-specific feature [-Wc99-extensions]
case 2: { return (coord) { c.x + ( 1l << (lv-1) ), c.y + ( 1l << (lv-1) ) }; }
^
display.cc:23:27: warning: compound literals are a C99-specific feature [-Wc99-extensions]
case 3: { return (coord) { (1l<<lv) - 1 - c.y, ( 1l << (lv-1) ) - 1 - c.x }; }
^
display.cc:27:11: warning: compound literals are a C99-specific feature [-Wc99-extensions]
return (coord) {-1,-1}; /* dummy statement, never reached */
^
display.cc:21:46: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
case 1: { return (coord) { c.x, c.y + ( 1l << (lv-1) ) }; }
˜ ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
display.cc:22:41: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
case 2: { return (coord) { c.x + ( 1l << (lv-1) ), c.y + ( 1l << (lv-1) ) }; }
˜ ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
display.cc:22:65: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
case 2: { return (coord) { c.x + ( 1l << (lv-1) ), c.y + ( 1l << (lv-1) ) }; }
˜ ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
display.cc:23:50: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
case 3: { return (coord) { (1l<<lv) - 1 - c.y, ( 1l << (lv-1) ) - 1 - c.x }; }
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
display.cc:23:78: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
case 3: { return (coord) { (1l<<lv) - 1 - c.y, ( 1l << (lv-1) ) - 1 - c.x }; }
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
display.cc:91:25: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
set_size_request( 1l << canvas_size_level, 1l << canvas_size_level );
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
display.cc:91:50: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
set_size_request( 1l << canvas_size_level, 1l << canvas_size_level );
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
display.cc:137:50: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
sgn_MouseClicked( event, dataCol->rev_map_lo[ rev_map_idx ],
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
display.cc:138:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
dataCol->rev_map_hi[ rev_map_idx ] );
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
display.cc:135:60: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int rev_map_idx = (long(event->x) << canvas_size_level) | long(event->y);
˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
display.cc:157:52: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
adjPointerPos.set_value( dataCol->rev_map_lo[rev_map_idx] );
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
display.cc:156:63: warning: implicit conversion loses integer precision: 'long' to 'const int' [-Wshorten-64-to-32]
const int rev_map_idx = ((long) x << canvas_size_level) | y;
˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
display.cc:198:32: warning: implicit conversion changes signedness: 'long' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
dataCol->rev_map_lo.resize( num_phys_pixels );
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
display.cc:199:32: warning: implicit conversion changes signedness: 'long' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
dataCol->rev_map_hi.resize( num_phys_pixels );
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
display.cc:201:9: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
for( long long i = get_begin(); i < get_begin() + get_num_pixels(); i++ ) {
^
display.cc:218:61: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
unsigned rev_map_idx = ((c.x+xx) << canvas_size_level) | (c.y+yy);
˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
display.cc:261:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
palette_level = palette_level_;
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
34 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c ruler.cc -o ruler.o
In file included from ruler.cc:6:
In file included from ./ruler.h:4:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm.h:29:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm/gc.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm/drawable.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/pangomm-1.4/pangomm/layout.h:35:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/pangomm-1.4/pangomm/context.h:42:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/context.h:27:
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/pattern.h:35:1: warning: struct 'Matrix' was previously declared as a class [-Wmismatched-tags]
struct Matrix;
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/matrix.h:50:7: note: previous use is here
class Matrix : public cairo_matrix_t
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/pattern.h:35:1: note: did you mean class here?
struct Matrix;
^˜˜˜˜˜
class
In file included from ruler.cc:6:
In file included from ./ruler.h:4:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm.h:150:
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm/statusicon.h:237:38: warning: extra ';' inside a class [-Wextra-semi]
Glib::RefPtr<Gio::Icon> get_icon();;
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm/statusicon.h:239:50: warning: extra ';' inside a class [-Wextra-semi]
Glib::RefPtr<const Gio::Icon> get_icon() const;;
^
In file included from ruler.cc:6:
In file included from ./ruler.h:6:
./display.h:14:16: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
coord hilbert( long long t, int lv );
^
./display.h:73:4: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
long long get_begin( void ) const;
^
./display.h:108:8: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
inline long long HilbertCurveDisplay::get_begin( void ) const
^
./display.h:113:12: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
return (long long) zoom_offset << ( 2 * (canvas_size_level-pixel_size_level) );
^
ruler.cc:16:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if( (strlen(buf)-i) % 3 == 0 && i != 0 )
˜^
ruler.cc:14:28: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32]
for( int i = strlen(buf)-1; i >= 0; i-- ) {
˜ ˜˜˜˜˜˜˜˜˜˜˜^˜
ruler.cc:119:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
col = (*palette)[ palette->size() * x / semi_pal_width ];
˜ ^
ruler.cc:119:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
col = (*palette)[ palette->size() * x / semi_pal_width ];
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ruler.cc:129:68: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
col = (*neg_palette)[ palette->size() * (semi_pal_width-1 - x) / semi_pal_width ];
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
ruler.cc:129:75: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
col = (*neg_palette)[ palette->size() * (semi_pal_width-1 - x) / semi_pal_width ];
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
ruler.cc:178:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
14 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c window.cc -o window.o
In file included from window.cc:4:
In file included from ./window.h:5:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm.h:29:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm/gc.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gdkmm-2.4/gdkmm/drawable.h:31:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/pangomm-1.4/pangomm/layout.h:35:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/pangomm-1.4/pangomm/context.h:42:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/context.h:27:
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/pattern.h:35:1: warning: struct 'Matrix' was previously declared as a class [-Wmismatched-tags]
struct Matrix;
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/matrix.h:50:7: note: previous use is here
class Matrix : public cairo_matrix_t
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/cairomm-1.0/cairomm/pattern.h:35:1: note: did you mean class here?
struct Matrix;
^˜˜˜˜˜
class
In file included from window.cc:4:
In file included from ./window.h:5:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm.h:150:
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm/statusicon.h:237:38: warning: extra ';' inside a class [-Wextra-semi]
Glib::RefPtr<Gio::Icon> get_icon();;
^
/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/gtkmm-2.4/gtkmm/statusicon.h:239:50: warning: extra ';' inside a class [-Wextra-semi]
Glib::RefPtr<const Gio::Icon> get_icon() const;;
^
In file included from window.cc:4:
In file included from ./window.h:8:
./display.h:14:16: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
coord hilbert( long long t, int lv );
^
./display.h:73:4: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
long long get_begin( void ) const;
^
./display.h:108:8: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
inline long long HilbertCurveDisplay::get_begin( void ) const
^
./display.h:113:12: warning: 'long long' is a C++11 extension [-Wc++11-long-long]
return (long long) zoom_offset << ( 2 * (canvas_size_level-pixel_size_level) );
^
window.cc:187:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
DataColorizer * dcol = (*dataCols)[ pos ];
˜ ^˜˜
window.cc:333:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
canvas.set_dataCol( (*dataCols)[ cboxtSeqnames.get_active_row_number() ] );
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
window.cc:338:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
10 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o HilbertVisGUI.so R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -L/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib -lgtkmm-2.4 -lgiomm-2.4 -lgdkmm-2.4 -latkmm-1.6 -lgtk-x11-2.0 -lpangomm-1.4 -lcairomm-1.0 -lglibmm-2.4 -lsigc-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lz -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lintl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/HilbertVisGUI.Rcheck/HilbertVisGUI/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HilbertVisGUI)