Harshlight 1.32.1
Maurizio Pellegrino
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/Harshlight | | Last Changed Rev: 75507 / Revision: 76155 | | Last Changed Date: 2013-04-10 09:53:37 -0700 (Wed, 10 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Harshlight.buildbin-libdir Harshlight_1.32.1.tar.gz'
>>>>>>>
* installing *source* package 'Harshlight' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c Harshlight.c -o Harshlight.o
Harshlight.c:140:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if ((to_do_stack = malloc(to_do_alloc * sizeof(int))) == NULL){
^˜˜˜˜˜˜˜˜˜˜ ˜
Harshlight.c:221:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if ((curr_tmp = realloc(to_do_stack, (to_do_alloc + 8*max_size) * sizeof(int))) == NULL){
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜ ˜
Harshlight.c:294:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
curr_tmp = realloc(to_do_stack, (to_do_alloc + 8*max_size) * sizeof(int));
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜ ˜
Harshlight.c:587:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if ((circle_value = (double *)malloc(num_points*sizeof(double))) == NULL){
^˜˜˜˜˜˜˜˜˜˜
Harshlight.c:1032:26: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
area = 2*3.14*r_square + 50;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
Harshlight.c:1034:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if ((*stack1 = malloc(area * sizeof(int))) == NULL){
^˜˜˜ ˜
Harshlight.c:1068:26: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
area = 2*3.14*r_square + 50;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
Harshlight.c:1070:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if ((*stack1 = malloc(area * sizeof(int))) == NULL){
^˜˜˜ ˜
Harshlight.c:1079:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if ((*stack2 = malloc(area * sizeof(int))) == NULL){
^˜˜˜ ˜
Harshlight.c:1124:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if ((new_list = (double *)malloc(area_new_list*sizeof(double))) == NULL){
^˜˜˜˜˜˜˜˜˜˜˜˜˜
Harshlight.c:1220:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if ((random_list = malloc(ROW*COL * sizeof(int))) == NULL){
˜˜˜^˜˜˜ ˜
Harshlight.c:1318:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if((sorted = (double *)malloc(*size*sizeof(double))) == NULL){
^˜˜˜˜˜
Harshlight.c:1316:27: warning: unused variable 'sorted2' [-Wunused-variable]
double *sorted; double *sorted2;
^
Harshlight.c:1350:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if((sorted = (double *)malloc(*size*sizeof(double))) == NULL){
^˜˜˜˜˜
Harshlight.c:1471:26: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier]
PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br);
˜^
Harshlight.c:1474:26: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier]
PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr);
˜^
Harshlight.c:1532:107: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier]
PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
˜^
Harshlight.c:1542:26: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier]
PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c);
˜^
Harshlight.c:1543:26: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier]
PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d);
˜^
Harshlight.c:1555:107: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier]
PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
˜^
20 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o Harshlight.so Harshlight.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/Harshlight.buildbin-libdir/Harshlight/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Harshlight)
>>>>>>>
>>>>>>> FIXING LINKS FOR Harshlight.buildbin-libdir/Harshlight/libs//Harshlight.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "Harshlight.buildbin-libdir/Harshlight/libs//Harshlight.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "Harshlight.buildbin-libdir/Harshlight/libs//Harshlight.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "Harshlight.buildbin-libdir/Harshlight/libs//Harshlight.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "Harshlight.buildbin-libdir/Harshlight/libs//Harshlight.so"