Package: HCsnip

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch HCsnip_1.0.0.tar.gz

StartedAt: 2013-05-01 06:47:31 -0700 (Wed, 01 May 2013)

EndedAt: 2013-05-01 06:51:35 -0700 (Wed, 01 May 2013)

EllapsedTime: 243.9 seconds

RetCode: 0

Status:  OK

CheckDir: HCsnip.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/HCsnip.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'HCsnip/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HCsnip' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'HCsnip' can be installed ... [13s/14s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [114s/118s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
TwoHC_perm   40.641  0.309  42.672
TwoHC_assign 31.332  0.362  33.954
perm_test    10.271  0.349  10.806
RSF_eval      6.087  0.618   6.799
measure       5.508  0.110   5.762
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'HCsnip' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HCsnip)

name	user	system	elapsed
BullingerLeukemia	0.106	0.015	0.123
EnvioPlot	0.571	0.035	0.612
HCsnipper	2.607	0.059	2.734
RSF_eval	6.087	0.618	6.799
TcgaGBM	0.152	0.022	0.184
TwoHC_assign	31.332	0.362	33.954
TwoHC_perm	40.641	0.309	42.672
cluster_pred	4.701	0.075	4.808
measure	5.508	0.110	5.762
perm_test	10.271	0.349	10.806
surv_measure	2.894	0.057	3.003