GeneGroupAnalysis 1.6.0
Alejandro Quiroz-Zarate
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/GeneGroupAnalysis | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneGroupAnalysis.buildbin-libdir GeneGroupAnalysis_1.6.0.tar.gz'
>>>>>>>
* installing *source* package 'GeneGroupAnalysis' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c ConditionalsAll.c -o ConditionalsAll.o
In file included from ConditionalsAll.c:8:
In file included from ./InvWishart.h:8:
In file included from ./Densidades.h:8:
In file included from ./OpMat.h:8:
In file included from ./libMatInv.h:8:
./libmat.h:37:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
mat=(int*)R_alloc(row,sizeof(int));
˜˜˜˜˜˜˜ ^˜˜
./libmat.h:46:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
mat=(double*)R_alloc(row,sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
./libmat.h:55:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
ptr1=(double*)R_alloc(row*col,sizeof(double));
˜˜˜˜˜˜˜ ˜˜˜^˜˜˜
./libmat.h:56:24: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
mat=(double**)R_alloc(row,sizeof(double*));
˜˜˜˜˜˜˜ ^˜˜
./libmat.h:67:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
ptr1=(double*)R_alloc(row*col,sizeof(double));
˜˜˜˜˜˜˜ ˜˜˜^˜˜˜
./libmat.h:68:24: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
mat=(double**)R_alloc(row,sizeof(double*));
˜˜˜˜˜˜˜ ^˜˜
In file included from ConditionalsAll.c:8:
In file included from ./InvWishart.h:8:
In file included from ./Densidades.h:8:
./OpMat.h:20:2: warning: '/*' within block comment [-Wcomment]
/*======================================================
^
./OpMat.h:40:2: warning: '/*' within block comment [-Wcomment]
/*======================================================
^
./OpMat.h:58:2: warning: '/*' within block comment [-Wcomment]
/*======================================================
^
./OpMat.h:76:2: warning: '/*' within block comment [-Wcomment]
/*======================================================
^
./OpMat.h:95:2: warning: '/*' within block comment [-Wcomment]
/*======================================================
^
./OpMat.h:119:2: warning: '/*' within block comment [-Wcomment]
/*======================================================
^
./OpMat.h:153:2: warning: '/*' within block comment [-Wcomment]
/*======================================================
^
./OpMat.h:197:2: warning: '/*' within block comment [-Wcomment]
/*======================================================
^
ConditionalsAll.c:42:3: warning: '/*' within block comment [-Wcomment]
/* Definicion de las variables de trabajo
^
ConditionalsAll.c:152:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
Criwish(vn, TT, AuxLn,RLn);
˜˜˜˜˜˜˜ ^˜
ConditionalsAll.c:193:3: warning: '/*' within block comment [-Wcomment]
/* Definicion de las variables de trabajo
^
ConditionalsAll.c:342:3: warning: '/*' within block comment [-Wcomment]
/* Definicion de las variables de trabajo
^
ConditionalsAll.c:460:3: warning: '/*' within block comment [-Wcomment]
/* Definicion de las variables de trabajo
^
ConditionalsAll.c:646:3: warning: '/*' within block comment [-Wcomment]
/* Definicion de las variables de trabajo
^
20 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o GeneGroupAnalysis.so ConditionalsAll.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GeneGroupAnalysis)
>>>>>>>
>>>>>>> FIXING LINKS FOR GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs//GeneGroupAnalysis.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs//GeneGroupAnalysis.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs//GeneGroupAnalysis.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs//GeneGroupAnalysis.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs//GeneGroupAnalysis.so"