ExpressionView 1.12.0
Gabor Csardi
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/ExpressionView | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ExpressionView.buildbin-libdir ExpressionView_1.12.0.tar.gz'
>>>>>>>
* installing *source* package 'ExpressionView' ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c order.cpp -o order.o
order.cpp:53:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order.resize(nrows);
˜˜˜˜˜ ^˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1049:17: note: expanded from macro 'nrows'
#define nrows Rf_nrows
^˜˜˜˜˜˜˜
order.cpp:56:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
data.resize(nrows);
˜˜˜˜ ^˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1049:17: note: expanded from macro 'nrows'
#define nrows Rf_nrows
^˜˜˜˜˜˜˜
order.cpp:59:9: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[row] = INTEGER(_order)[row] - 1;
˜˜˜˜˜ ^˜˜
order.cpp:60:8: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
data[row].resize(ncolumns);
˜˜˜˜ ^˜˜
order.cpp:60:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
data[row].resize(ncolumns);
˜˜˜˜ ^˜˜˜˜˜˜˜
order.cpp:63:9: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
data[row][column] = temp;
˜˜˜˜ ^˜˜
order.cpp:63:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
data[row][column] = temp;
˜˜˜˜ ^˜˜˜˜˜
order.cpp:103:41: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
INTEGER(result)[row] = clusters.order[row] + 1;
˜˜˜˜˜˜˜˜ ^˜˜
order.cpp:125:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
cres = R_alloc(nlen+1, sizeof(char));
˜˜˜˜˜˜˜ ˜˜˜˜^˜
order.cpp:128:19: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
memcpy(pt, p, pos);
˜˜˜˜˜˜ ^˜˜
order.cpp:134:19: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
memcpy(pt, p, rem);
˜˜˜˜˜˜ ^˜˜
order.cpp:116:12: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int slen=strlen(str);
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
12 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c orderclusters.cpp -o orderclusters.o
orderclusters.cpp:54:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order.resize(nSlots);
˜˜˜˜˜ ^˜˜˜˜˜
orderclusters.cpp:56:9: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[slot] = _order[slot];
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:56:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[slot] = _order[slot];
˜˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:59:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
multiplicity.resize(nSlots, 1);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
orderclusters.cpp:60:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
optimallength.resize(nClusters);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
orderclusters.cpp:63:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
maximalcluster[i].resize(nClusters);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
orderclusters.cpp:63:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
maximalcluster[i].resize(nClusters);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
orderclusters.cpp:51:11: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
nSlots = data.size();
˜ ^˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:52:14: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
nClusters = data[0].size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:67:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
orderclusters.cpp:78:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
data.resize(nSlots);
˜˜˜˜ ^˜˜˜˜˜
orderclusters.cpp:80:8: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
data[slot].resize(nClusters, 0);
˜˜˜˜ ^˜˜˜
orderclusters.cpp:80:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
data[slot].resize(nClusters, 0);
˜˜˜˜ ^˜˜˜˜˜˜˜˜
orderclusters.cpp:83:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order.resize(nSlots);
˜˜˜˜˜ ^˜˜˜˜˜
orderclusters.cpp:85:9: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[slot] = slot;
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:88:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
multiplicity.resize(nSlots, 1);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
orderclusters.cpp:89:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
optimallength.resize(nClusters);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
orderclusters.cpp:92:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
maximalcluster[i].resize(nClusters);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
orderclusters.cpp:92:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
maximalcluster[i].resize(nClusters);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
orderclusters.cpp:108:9: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
data[slot][cluster] = 1;
˜˜˜˜ ^˜˜˜
orderclusters.cpp:108:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
data[slot][cluster] = 1;
˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:110:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
optimallength[cluster] = right - left + 1;
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:127:10: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
data[slot][cluster] = 1;
˜˜˜˜ ^˜˜˜
orderclusters.cpp:127:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
data[slot][cluster] = 1;
˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:134:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
orderclusters.cpp:159:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( data[slot1] == data[slot2] ) {
˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:159:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( data[slot1] == data[slot2] ) {
˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:165:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( accumulate(data[slot1].begin(), data[slot1].end(), 0) == 0 ) {
˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:165:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( accumulate(data[slot1].begin(), data[slot1].end(), 0) == 0 ) {
˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:170:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
newdata.push_back(data[slot1]);
˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:187:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( discard.find(order[slot]) == discard.end() ) {
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:188:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
neworder.push_back(temporder[order[slot]]);
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:199:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
length += data[slot][cluster];
˜˜˜˜ ^˜˜˜
orderclusters.cpp:199:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
length += data[slot][cluster];
˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:201:17: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
optimallength[cluster] = length;
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:172:58: warning: implicit conversion loses integer precision: 'unsigned long' to 'const int' [-Wshorten-64-to-32]
temporder.insert ( pair<int, int>(slot1,newdata.size()-1) );
˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
orderclusters.cpp:194:11: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
nSlots = data.size();
˜ ^˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:220:51: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for ( set<int>::iterator slotp = redundantslots[order[slot]].begin(); slotp != redundantslots[order[slot]].end(); slotp++ ) {
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:220:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for ( set<int>::iterator slotp = redundantslots[order[slot]].begin(); slotp != redundantslots[order[slot]].end(); slotp++ ) {
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:220:97: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for ( set<int>::iterator slotp = redundantslots[order[slot]].begin(); slotp != redundantslots[order[slot]].end(); slotp++ ) {
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:220:103: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for ( set<int>::iterator slotp = redundantslots[order[slot]].begin(); slotp != redundantslots[order[slot]].end(); slotp++ ) {
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:225:51: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for ( set<int>::iterator slotp = redundantslots[nSlots].begin(); slotp != redundantslots[nSlots].end(); slotp++ ) {
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
orderclusters.cpp:225:92: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for ( set<int>::iterator slotp = redundantslots[nSlots].begin(); slotp != redundantslots[nSlots].end(); slotp++ ) {
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
orderclusters.cpp:238:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
multiplicity.resize(nSlots, 1);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
orderclusters.cpp:230:11: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
nSlots = neworder.size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:255:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int temp = order[slot1];
˜˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:256:9: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[slot1] = order[slot2];
˜˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:256:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[slot1] = order[slot2];
˜˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:257:9: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[slot2] = temp;
˜˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:251:14: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int slot1 = order.size();
˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:321:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double result = inner_product(data[order[slot1]].begin(), data[order[slot1]].end(), data[order[slot2]].begin(), 0.);
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:321:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double result = inner_product(data[order[slot1]].begin(), data[order[slot1]].end(), data[order[slot2]].begin(), 0.);
˜˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:321:65: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double result = inner_product(data[order[slot1]].begin(), data[order[slot1]].end(), data[order[slot2]].begin(), 0.);
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:321:71: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double result = inner_product(data[order[slot1]].begin(), data[order[slot1]].end(), data[order[slot2]].begin(), 0.);
˜˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:321:91: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double result = inner_product(data[order[slot1]].begin(), data[order[slot1]].end(), data[order[slot2]].begin(), 0.);
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:321:97: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double result = inner_product(data[order[slot1]].begin(), data[order[slot1]].end(), data[order[slot2]].begin(), 0.);
˜˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:330:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int l1 = maximalcluster[1][cluster];
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:331:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int l2 = maximalcluster[2][cluster];
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:376:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( data[order[slot]][*cluster] ) {
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:376:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( data[order[slot]][*cluster] ) {
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:376:27: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( data[order[slot]][*cluster] ) {
˜˜˜˜ ^˜˜˜˜˜˜˜
orderclusters.cpp:377:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
length += multiplicity[order[slot]];
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:377:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
length += multiplicity[order[slot]];
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:400:21: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
maximalcluster[0][*cluster] = maxlength;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
orderclusters.cpp:401:21: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
maximalcluster[1][*cluster] = maxl1;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
orderclusters.cpp:402:21: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
maximalcluster[2][*cluster] = maxl2;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
orderclusters.cpp:422:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
optimum += data[slot][cluster] * multiplicity[slot];
˜˜˜˜ ^˜˜˜
orderclusters.cpp:422:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
optimum += data[slot][cluster] * multiplicity[slot];
˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:422:50: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
optimum += data[slot][cluster] * multiplicity[slot];
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:433:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int temp = order[slot1];
˜˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:434:8: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[slot1] = order[slot2];
˜˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:434:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[slot1] = order[slot2];
˜˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:435:8: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[slot2] = temp;
˜˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:452:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
neworder.push_back(order[slot]);
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:455:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
neworder.push_back(order[slot]);
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:459:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
neworder.push_back(order[slot]);
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:462:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
neworder.push_back(order[slot]);
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:468:9: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[slot] = neworder[slotp++];
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:468:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[slot] = neworder[slotp++];
˜˜˜˜˜˜˜˜ ˜˜˜˜˜^˜
orderclusters.cpp:526:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( data[order[start]][cluster] ) {
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:526:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( data[order[start]][cluster] ) {
˜˜˜˜˜ ^˜˜˜˜
orderclusters.cpp:526:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( data[order[start]][cluster] ) {
˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:531:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( !data[order[end]][cluster] ) {
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
orderclusters.cpp:531:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( !data[order[end]][cluster] ) {
˜˜˜˜˜ ^˜˜
orderclusters.cpp:531:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( !data[order[end]][cluster] ) {
˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:583:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int maxlength = ( what ) ? optimallength[cluster] : nSlots - optimallength[cluster];
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:583:77: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int maxlength = ( what ) ? optimallength[cluster] : nSlots - optimallength[cluster];
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:590:14: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( data[order[slot]][cluster] ) {
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:590:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( data[order[slot]][cluster] ) {
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:590:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( data[order[slot]][cluster] ) {
˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:594:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( !data[order[slot]][cluster] ) {
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:594:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( !data[order[slot]][cluster] ) {
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:594:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( !data[order[slot]][cluster] ) {
˜˜˜˜ ^˜˜˜˜˜˜
orderclusters.cpp:601:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
permutation.resize(nslots);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
orderclusters.cpp:603:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
permutation[i] = i;
˜˜˜˜˜˜˜˜˜˜˜ ^
orderclusters.cpp:622:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
swapslots.push_back(make_pair(slot,order[slot]));
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:630:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
print("%d ", swapslots[i].first);
˜˜˜˜˜˜˜˜˜ ^
orderclusters.cpp:638:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[swapslots[slot].first] = swapslots[permutation[slot]].second;
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
orderclusters.cpp:638:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[swapslots[slot].first] = swapslots[permutation[slot]].second;
˜˜˜˜˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:638:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[swapslots[slot].first] = swapslots[permutation[slot]].second;
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:638:58: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[swapslots[slot].first] = swapslots[permutation[slot]].second;
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:650:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[swapslots[slot].first] = swapslots[bestpermutation[slot]].second;
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
orderclusters.cpp:650:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[swapslots[slot].first] = swapslots[bestpermutation[slot]].second;
˜˜˜˜˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:650:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[swapslots[slot].first] = swapslots[bestpermutation[slot]].second;
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:650:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
order[swapslots[slot].first] = swapslots[bestpermutation[slot]].second;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:619:45: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32]
int slot = random(0, possibleslots.size()-1);
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
orderclusters.cpp:755:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
print("%3d %3d %3d: ", slot, order[slot], multiplicity[order[slot]]);
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:755:58: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
print("%3d %3d %3d: ", slot, order[slot], multiplicity[order[slot]]);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:755:64: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
print("%3d %3d %3d: ", slot, order[slot], multiplicity[order[slot]]);
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:757:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
print("%d", data[order[slot]][cluster]);
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
orderclusters.cpp:757:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
print("%d", data[order[slot]][cluster]);
˜˜˜˜˜ ^˜˜˜
orderclusters.cpp:757:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
print("%d", data[order[slot]][cluster]);
˜˜˜˜ ^˜˜˜˜˜˜
112 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o ExpressionView.so order.o orderclusters.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/ExpressionView.buildbin-libdir/ExpressionView/libs
** R
** inst
** preparing package for lazy loading
in method for 'ExportEV' with signature 'biclusters="Biclust"': no definition for class "Biclust"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ExpressionView)
>>>>>>>
>>>>>>> FIXING LINKS FOR ExpressionView.buildbin-libdir/ExpressionView/libs//ExpressionView.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs//ExpressionView.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs//ExpressionView.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs//ExpressionView.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs//ExpressionView.so"