BioC 2.12: CHECK report for CoCiteStats on george2

Package: CoCiteStats

Version: 1.32.0

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings CoCiteStats_1.32.0.tar.gz

StartedAt: 2013-10-09 01:07:41 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 01:15:24 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 463.1 seconds

RetCode: 0

Status:  OK

CheckDir: CoCiteStats.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/CoCiteStats.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CoCiteStats/DESCRIPTION’ ... OK
* this is package ‘CoCiteStats’ version ‘1.32.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CoCiteStats’ can be installed ... [13s/14s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: gene.geneslist.statistic.Rd:19-21: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [325s/329s] OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
actorAdjTable            70.424  0.556  72.049
gene.geneslist.sig       51.107  0.208  51.623
twowayTable              40.527  0.012  40.575
gene.geneslist.statistic 40.342  0.100  41.378
twTStats                 39.718  0.044  40.356
gene.gene.statistic      38.511  0.216  39.757
paperLen                 35.059  0.084  35.245
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/CoCiteStats.Rcheck/00check.log’
for details.

* installing *source* package ‘CoCiteStats’ ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (CoCiteStats)

name	user	system	elapsed
actorAdjTable	70.424	0.556	72.049
gene.gene.statistic	38.511	0.216	39.757
gene.geneslist.sig	51.107	0.208	51.623
gene.geneslist.statistic	40.342	0.100	41.378
paperLen	35.059	0.084	35.245
twTStats	39.718	0.044	40.356
twowayTable	40.527	0.012	40.575