BAC 1.20.0
Raphael Gottardo
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/BAC | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BAC.buildbin-libdir BAC_1.20.0.tar.gz'
>>>>>>>
* installing *source* package 'BAC' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c BAC.c -o BAC.o
BAC.c:65:15: warning: implicit conversion from 'double' to 'int' changes value from 0.01 to 0 [-Wliteral-conversion]
w=dvector(*G,0.01);
˜˜˜˜˜˜˜ ^˜˜˜
BAC.c:350:12: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int start=fmax2(0,g-nb_neighbors);
˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rmath.h:238:16: note: expanded from macro 'fmax2'
#define fmax2 Rf_fmax2
^
BAC.c:351:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int end=fmin2(G-1,g+nb_neighbors);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rmath.h:239:16: note: expanded from macro 'fmin2'
#define fmin2 Rf_fmin2
^
BAC.c:440:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
start=fmax2(0,g-nb_neighbors);
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rmath.h:238:16: note: expanded from macro 'fmax2'
#define fmax2 Rf_fmax2
^
BAC.c:441:7: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
end=fmin2(G-1,g+nb_neighbors);
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rmath.h:239:16: note: expanded from macro 'fmin2'
#define fmin2 Rf_fmin2
^
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c util.c -o util.o
util.c:77:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
array=(double **)R_alloc(nb_row, sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜˜
util.c:80:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
array[i]=(double *)R_alloc(nb_col, sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜˜
util.c:96:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
vector=(double *)R_alloc(length, sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜˜
util.c:113:24: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
vector=(int *)R_alloc(length, sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜˜
4 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o BAC.so BAC.o util.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/BAC.buildbin-libdir/BAC/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BAC)
>>>>>>>
>>>>>>> FIXING LINKS FOR BAC.buildbin-libdir/BAC/libs//BAC.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "BAC.buildbin-libdir/BAC/libs//BAC.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "BAC.buildbin-libdir/BAC/libs//BAC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "BAC.buildbin-libdir/BAC/libs//BAC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "BAC.buildbin-libdir/BAC/libs//BAC.so"