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BioC 2.12: BUILD BIN report for tweeDEseq on moscato2

This page was generated on 2013-10-09 09:39:03 -0700 (Wed, 09 Oct 2013).

Package 648/671HostnameOS / ArchBUILDCHECKBUILD BIN
tweeDEseq 1.6.2
Juan R Gonzalez
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/tweeDEseq
Last Changed Rev: 79928 / Revision: 81334
Last Changed Date: 2013-08-29 14:40:22 -0700 (Thu, 29 Aug 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: tweeDEseq
Version: 1.6.2
Command: rm -rf tweeDEseq.buildbin-libdir && mkdir tweeDEseq.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=tweeDEseq.buildbin-libdir tweeDEseq_1.6.2.tar.gz
StartedAt: 2013-10-09 05:33:17 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 05:33:53 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 35.7 seconds
RetCode: 0
Status:  OK  
PackageFile: tweeDEseq_1.6.2.zip
PackageFileSize: 429.3 KiB

Command output


install for i386

* installing *source* package 'tweeDEseq' ...
** libs
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c cov_wt_C.c -o cov_wt_C.o
cov_wt_C.c: In function 'cov_wt_C':
cov_wt_C.c:79:18: warning: 'wvar' may be used uninitialized in this function [-Wuninitialized]
cov_wt_C.c: In function 'momentEstimates_wt_C':
cov_wt_C.c:154:16: warning: 'moments' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c init_tweeDEseq.c -o init_tweeDEseq.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c loglikGlm.c -o loglikGlm.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c logprobs.c -o logprobs.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c permtest.c -o permtest.o
permtest.c: In function 'pval':
permtest.c:38:10: warning: variable 'res' set but not used [-Wunused-but-set-variable]
permtest.c:43:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c probs.c -o probs.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c zhu2.c -o zhu2.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c zhu3.c -o zhu3.o
gcc -m32 -shared -s -static-libgcc -o tweeDEseq.dll tmp.def cov_wt_C.o init_tweeDEseq.o loglikGlm.o logprobs.o permtest.o probs.o zhu2.o zhu3.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/tweeDEseq.buildbin-libdir/tweeDEseq/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'tweeDEseq' ...
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c cov_wt_C.c -o cov_wt_C.o
cov_wt_C.c: In function 'cov_wt_C':
cov_wt_C.c:79:18: warning: 'wvar' may be used uninitialized in this function [-Wuninitialized]
cov_wt_C.c: In function 'momentEstimates_wt_C':
cov_wt_C.c:154:16: warning: 'moments' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c init_tweeDEseq.c -o init_tweeDEseq.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c loglikGlm.c -o loglikGlm.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c logprobs.c -o logprobs.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c permtest.c -o permtest.o
permtest.c: In function 'pval':
permtest.c:38:10: warning: variable 'res' set but not used [-Wunused-but-set-variable]
permtest.c:43:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c probs.c -o probs.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c zhu2.c -o zhu2.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c zhu3.c -o zhu3.o
gcc -m64 -shared -s -static-libgcc -o tweeDEseq.dll tmp.def cov_wt_C.o init_tweeDEseq.o loglikGlm.o logprobs.o permtest.o probs.o zhu2.o zhu3.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/tweeDEseq.buildbin-libdir/tweeDEseq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tweeDEseq' as tweeDEseq_1.6.2.zip
* DONE (tweeDEseq)