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Package 547/631HostnameOS / ArchBUILDCHECKBUILD BIN
sagenhaft 1.29.1
Tim Beissbarth
Snapshot Date: 2013-01-15 17:01:14 -0800 (Tue, 15 Jan 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/sagenhaft
Last Changed Rev: 72054 / Revision: 72575
Last Changed Date: 2012-12-19 10:25:41 -0800 (Wed, 19 Dec 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: sagenhaft
Version: 1.29.1
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings sagenhaft_1.29.1.tar.gz
StartedAt: 2013-01-16 06:12:56 -0800 (Wed, 16 Jan 2013)
EndedAt: 2013-01-16 06:15:11 -0800 (Wed, 16 Jan 2013)
EllapsedTime: 134.9 seconds
RetCode: 0
Status:  OK 
CheckDir: sagenhaft.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/sagenhaft.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sagenhaft/DESCRIPTION’ ... OK
* this is package ‘sagenhaft’ version ‘1.29.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sagenhaft’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.2Mb
  sub-directories of 1Mb or more:
    extdata   7.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
sage.test: warning in dbinom(0:isize, p = (prob[i])[1], size = isize):
  partial argument match of 'p' to 'prob'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
error.correction     78.464  0.604  79.109
sagelibrary.simulate 23.169  0.072  23.263
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/sagenhaft.Rcheck/00check.log’
for details.

sagenhaft.Rcheck/00install.out:

* installing *source* package ‘sagenhaft’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘coerce’ when loading ‘SparseM’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘SAGEnhaft.Rnw’ 
** testing if installed package can be loaded
Warning: replacing previous import ‘coerce’ when loading ‘SparseM’

* DONE (sagenhaft)

sagenhaft.Rcheck/sagenhaft-Ex.timings:

nameusersystemelapsed
error.correction78.464 0.60479.109
extract.lib0.0040.0000.006
sage.library0.4080.0240.430
sage.library.comparison3.9530.0684.018
sage.test0.0080.0080.015
sage.utilities0.1720.0040.177
sagelibrary.simulate23.169 0.07223.263