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Package 540/631HostnameOS / ArchBUILDCHECKBUILD BIN
rTANDEM 0.99.3
Frederic Fournier
Snapshot Date: 2013-01-15 17:01:14 -0800 (Tue, 15 Jan 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rTANDEM
Last Changed Rev: 71956 / Revision: 72575
Last Changed Date: 2012-12-14 16:31:05 -0800 (Fri, 14 Dec 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  ERROR  skipped 
lamb2 Linux (openSUSE 11.4) / x86_64 [ ERROR ] skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  ERROR  skipped  skipped 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: rTANDEM
Version: 0.99.3
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rTANDEM
StartedAt: 2013-01-16 00:03:56 -0800 (Wed, 16 Jan 2013)
EndedAt: 2013-01-16 00:04:04 -0800 (Wed, 16 Jan 2013)
EllapsedTime: 8.1 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file ‘rTANDEM/DESCRIPTION’ ... OK
* preparing ‘rTANDEM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
      -----------------------------------
* installing *source* package ‘rTANDEM’ ...
** libs
g++ -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/loc/home/biocbuild/bbs-2.12-bioc/R/library/Rcpp/include"   -fpic  -g -O2  -c base64.cpp -o base64.o
g++ -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/loc/home/biocbuild/bbs-2.12-bioc/R/library/Rcpp/include"   -fpic  -g -O2  -c dataLoader.cpp -o dataLoader.o
g++ -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/loc/home/biocbuild/bbs-2.12-bioc/R/library/Rcpp/include"   -fpic  -g -O2  -c loadmspectrum.cpp -o loadmspectrum.o
In file included from /usr/lib64/gcc/x86_64-suse-linux/4.5/include/stdint.h:3:0,
                 from /usr/include/inttypes.h:28,
                 from /loc/home/biocbuild/bbs-2.12-bioc/R/library/Rcpp/include/Rcpp/hash/hash.h:25,
                 from /loc/home/biocbuild/bbs-2.12-bioc/R/library/Rcpp/include/Rcpp/sugar/sugar.h:28,
                 from /loc/home/biocbuild/bbs-2.12-bioc/R/library/Rcpp/include/Rcpp.h:70,
                 from saxhandler.h:139,
                 from saxgamlhandler.h:140,
                 from loadmspectrum.h:277,
                 from loadmspectrum.cpp:143:
/usr/include/stdint.h:52:1: error: duplicate ‘unsigned’
/usr/include/stdint.h:52:23: error: multiple types in one declaration
/usr/include/stdint.h:52:23: error: declaration does not declare anything
/usr/include/stdint.h:56:1: error: duplicate ‘unsigned’
/usr/include/stdint.h:56:1: error: ‘long long long’ is too long for GCC
/usr/include/stdint.h:56:27: error: declaration does not declare anything
make: *** [loadmspectrum.o] Error 1
ERROR: compilation failed for package ‘rTANDEM’
* removing ‘/tmp/RtmplqDBi7/Rinst7e30751e80ed/rTANDEM’
      -----------------------------------
ERROR: package installation failed