BioC 2.12: CHECK report for pRoloc on moscato2

Package: pRoloc

Version: 1.0.1

Command: rm -rf pRoloc.buildbin-libdir && mkdir pRoloc.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pRoloc.buildbin-libdir pRoloc_1.0.1.tar.gz >pRoloc-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=pRoloc.buildbin-libdir --install="check:pRoloc-install.out" --force-multiarch --no-vignettes --timings pRoloc_1.0.1.tar.gz && mv pRoloc.buildbin-libdir/* pRoloc.Rcheck/ && rmdir pRoloc.buildbin-libdir

StartedAt: 2013-10-09 03:39:58 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 03:56:53 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 1014.9 seconds

RetCode: 0

Status: WARNINGS

CheckDir: pRoloc.Rcheck

Warnings: 1

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/pRoloc.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pRoloc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pRoloc' version '1.0.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pRoloc' can be installed ... WARNING
Found the following significant warnings:
  Warning: package 'Rcpp' was built under R version 3.0.2
  Warning: package 'Rcpp' was built under R version 3.0.2
  Warning: package 'Rcpp' was built under R version 3.0.2
See 'E:/biocbld/bbs-2.12-bioc/meat/pRoloc.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [76s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
perTurboClassification 17.89   0.05   17.96
nnetClassification      8.61   0.09    8.71
rfClassification        7.70   0.05    7.75
svmClassification       7.66   0.04    8.30
nbClassification        5.86   0.00    5.86
ksvmClassification      5.24   0.05    5.40
** running examples for arch 'x64' ... [81s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
perTurboClassification 18.12   0.07   18.19
svmClassification       9.20   0.09    9.29
nnetClassification      8.82   0.00    8.82
rfClassification        6.66   0.09    7.39
nbClassification        5.90   0.04    6.43
ksvmClassification      5.62   0.04    5.71
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'test-all.R' [195s]
 [195s] OK
** running tests for arch 'x64'
  Running 'test-all.R' [234s]
 [234s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
See
  'E:/biocbld/bbs-2.12-bioc/meat/pRoloc.Rcheck/00check.log'
for details.


install for i386

* installing *source* package 'pRoloc' ...
** R
** inst
** preparing package for lazy loading
Warning: package 'Rcpp' was built under R version 3.0.2
Warning: replacing previous import 'alpha' when loading 'scales'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: package 'Rcpp' was built under R version 3.0.2
Warning: replacing previous import 'alpha' when loading 'scales'

install for x64

* installing *source* package 'pRoloc' ...
** testing if installed package can be loaded
Warning: package 'Rcpp' was built under R version 3.0.2
Warning: replacing previous import 'alpha' when loading 'scales'
* MD5 sums
packaged installation of 'pRoloc' as pRoloc_1.0.1.zip
* DONE (pRoloc)

BioC 2.12: CHECK report for pRoloc on moscato2

Summary

Command output