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Package 402/671HostnameOS / ArchBUILDCHECKBUILD BIN
metaArray 1.38.0
Hyungwon Choi
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/metaArray
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: metaArray
Version: 1.38.0
Command: rm -rf metaArray.buildbin-libdir && mkdir metaArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh metaArray_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R metaArray.buildbin-libdir
StartedAt: 2013-05-01 12:37:22 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 12:37:29 -0700 (Wed, 01 May 2013)
EllapsedTime: 7.8 seconds
RetCode: 0
Status:  OK 
PackageFile: metaArray_1.38.0.tgz
PackageFileSize: 805.8 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=metaArray.buildbin-libdir metaArray_1.38.0.tar.gz'
>>>>>>> 

* installing *source* package 'metaArray' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c contr.c -o contr.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c dproc.c -o dproc.o
dproc.c:33:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(expr->label, 0, sizeof(int)*nc);
                                    ˜^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
dproc.c:33:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(expr->label, 0, sizeof(int)*nc);
                                    ˜^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
dproc.c:192:16: warning: unused variable 'nc' [-Wunused-variable]
  int num, nr, nc;
               ^
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c dproc2.c -o dproc2.o
dproc2.c:155:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(ys, 0.0, sizeof(double)*len);
                                ˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
dproc2.c:155:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(ys, 0.0, sizeof(double)*len);
                                ˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
dproc2.c:156:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(rw, 0.0, sizeof(double)*len);
                                ˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
dproc2.c:156:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(rw, 0.0, sizeof(double)*len);
                                ˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
dproc2.c:157:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(res, 0.0, sizeof(double)*len); 
                                 ˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
dproc2.c:157:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(res, 0.0, sizeof(double)*len); 
                                 ˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c intcor.c -o intcor.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c lowess.c -o lowess.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c mmath.c -o mmath.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c perm.c -o perm.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c poe.c -o poe.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o metaArray.so contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/metaArray.buildbin-libdir/metaArray/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (metaArray)


>>>>>>> 
>>>>>>> FIXING LINKS FOR metaArray.buildbin-libdir/metaArray/libs//metaArray.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "metaArray.buildbin-libdir/metaArray/libs//metaArray.so"