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BioC 2.12: BUILD BIN report for flowPeaks on petty

This page was generated on 2013-10-09 09:40:11 -0700 (Wed, 09 Oct 2013).

Package 226/671HostnameOS / ArchBUILDCHECKBUILD BIN
flowPeaks 1.2.0
Yongchao Ge
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/flowPeaks
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: flowPeaks
Version: 1.2.0
Command: rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowPeaks_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowPeaks.buildbin-libdir
StartedAt: 2013-10-09 00:53:25 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 00:53:52 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 26.7 seconds
RetCode: 0
Status:  OK 
PackageFile: flowPeaks_1.2.0.tgz
PackageFileSize: 4.074 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowPeaks.buildbin-libdir flowPeaks_1.2.0.tar.gz'
>>>>>>> 

* installing *source* package 'flowPeaks' ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -mtune=core2 -g -O2  -c Rpack.cpp -o Rpack.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -mtune=core2 -g -O2  -c Rregistrate.cpp -o Rregistrate.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -mtune=core2 -g -O2  -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -mtune=core2 -g -O2  -c flowPeaks.cpp -o flowPeaks.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -mtune=core2 -g -O2  -c func_collect.cpp -o func_collect.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -mtune=core2 -g -O2  -c func_collect_supp.cpp -o func_collect_supp.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -mtune=core2 -g -O2  -c gvector_gmatrix.cpp -o gvector_gmatrix.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -mtune=core2 -g -O2  -c kd_tree.cpp -o kd_tree.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   `gsl-config --cflags`  -fPIC  -mtune=core2 -g -O2  -c kmns.cpp -o kmns.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o flowPeaks.so Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowPeaks)


>>>>>>> 
>>>>>>> FIXING LINKS FOR flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"