>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=chopsticks.buildbin-libdir chopsticks_1.24.1.tar.gz'
>>>>>>>
* installing *source* package 'chopsticks' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c adler32.c -o adler32.o
adler32.c:138:22: warning: implicit conversion changes signedness: 'long' to 'unsigned long' [-Wsign-conversion]
rem = (unsigned)(len2 % BASE);
^˜˜˜ ˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c bind.c -o bind.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c compress.c -o compress.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c crc32.c -o crc32.o
crc32.c:273:47: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
c = crc_table[0][(c ^ *buf++) & 0xff] ^ (c >> 8);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
crc32.c:279:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:259:17: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:258:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:279:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:259:25: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:258:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:279:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:259:33: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:258:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:279:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:259:41: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:258:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:279:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:259:49: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:258:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:279:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:259:57: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:258:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:279:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:259:65: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:258:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:279:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:259:73: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:258:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:283:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT4;
^˜˜˜˜˜
crc32.c:258:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:289:47: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
c = crc_table[0][(c ^ *buf++) & 0xff] ^ (c >> 8);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
crc32.c:313:46: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
c = crc_table[4][(c >> 24) ^ *buf++] ^ (c << 8);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
crc32.c:320:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:299:17: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:298:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:320:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:299:25: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:298:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:320:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:299:33: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:298:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:320:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:299:41: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:298:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:320:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:299:49: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:298:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:320:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:299:57: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:298:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:320:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:299:65: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:298:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:320:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:299:73: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:298:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:324:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG4;
^˜˜˜˜˜
crc32.c:298:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:331:46: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
c = crc_table[4][(c >> 24) ^ *buf++] ^ (c << 8);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
22 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c deflate.c -o deflate.o
deflate.c:278:17: warning: implicit conversion changes signedness: 'int' to 'uInt' (aka 'unsigned int') [-Wsign-conversion]
s->w_bits = windowBits;
˜ ^˜˜˜˜˜˜˜˜˜
deflate.c:282:29: warning: implicit conversion changes signedness: 'int' to 'uInt' (aka 'unsigned int') [-Wsign-conversion]
s->hash_bits = memLevel + 7;
˜ ˜˜˜˜˜˜˜˜˜^˜˜
deflate.c:465:21: warning: implicit conversion changes signedness: 'int' to 'uInt' (aka 'unsigned int') [-Wsign-conversion]
s->good_match = good_length;
˜ ^˜˜˜˜˜˜˜˜˜˜
deflate.c:466:25: warning: implicit conversion changes signedness: 'int' to 'uInt' (aka 'unsigned int') [-Wsign-conversion]
s->max_lazy_match = max_lazy;
˜ ^˜˜˜˜˜˜˜
deflate.c:468:27: warning: implicit conversion changes signedness: 'int' to 'uInt' (aka 'unsigned int') [-Wsign-conversion]
s->max_chain_length = max_chain;
˜ ^˜˜˜˜˜˜˜˜
deflate.c:698:29: warning: implicit conversion loses integer precision: 'int' to 'Bytef' (aka 'unsigned char') [-Wconversion]
put_byte(s, val);
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
./deflate.h:268:57: note: expanded from macro 'put_byte'
#define put_byte(s, c) {s->pending_buf[s->pending++] = (c);}
^
deflate.c:729:29: warning: implicit conversion loses integer precision: 'int' to 'Bytef' (aka 'unsigned char') [-Wconversion]
put_byte(s, val);
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
./deflate.h:268:57: note: expanded from macro 'put_byte'
#define put_byte(s, c) {s->pending_buf[s->pending++] = (c);}
^
deflate.c:1035:23: warning: implicit conversion changes signedness: 'uInt' (aka 'unsigned int') to 'int' [-Wsign-conversion]
int best_len = s->prev_length; /* best match length so far */
˜˜˜˜˜˜˜˜ ˜˜˜^˜˜˜˜˜˜˜˜˜˜
deflate.c:1070:58: warning: implicit conversion changes signedness: 'uInt' (aka 'unsigned int') to 'int' [-Wsign-conversion]
if ((uInt)nice_match > s->lookahead) nice_match = s->lookahead;
˜ ˜˜˜^˜˜˜˜˜˜˜˜
deflate.c:1342:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
n = read_buf(s->strm, s->window + s->strstart + s->lookahead, more);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
deflate.c:1423:24: warning: implicit conversion changes signedness: 'long' to 'unsigned long' [-Wsign-conversion]
max_start = s->block_start + max_block_size;
˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
deflate.c:1502:44: warning: implicit conversion loses integer precision: 'unsigned int' to 'uch' (aka 'unsigned char') [-Wconversion]
s->match_length - MIN_MATCH, bflush);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./deflate.h:316:16: note: expanded from macro '_tr_tally_dist'
{ uch len = (length); \
^
deflate.c:1501:43: warning: implicit conversion loses integer precision: 'unsigned int' to 'ush' (aka 'unsigned short') [-Wconversion]
_tr_tally_dist(s, s->strstart - s->match_start,
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./deflate.h:317:17: note: expanded from macro '_tr_tally_dist'
ush dist = (distance); \
^
deflate.c:1624:43: warning: implicit conversion loses integer precision: 'unsigned int' to 'uch' (aka 'unsigned char') [-Wconversion]
s->prev_length - MIN_MATCH, bflush);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./deflate.h:316:16: note: expanded from macro '_tr_tally_dist'
{ uch len = (length); \
^
deflate.c:1623:46: warning: implicit conversion loses integer precision: 'unsigned int' to 'ush' (aka 'unsigned short') [-Wconversion]
_tr_tally_dist(s, s->strstart -1 - s->prev_match,
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./deflate.h:317:17: note: expanded from macro '_tr_tally_dist'
ush dist = (distance); \
^
15 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c force_hom.c -o force_hom.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c glm_test.c -o glm_test.o
glm_test.c:107:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *yw = (double *) calloc(N, sizeof(double));
˜˜˜˜˜˜ ^
glm_test.c:155:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
(iter && (abs(wss-wss_last)/wss_last < conv));
˜˜˜ ˜˜˜^˜˜˜˜˜˜˜˜
glm_test.c:331:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
Zri = Zr = (double *) calloc(N*P, sizeof(double));
˜˜˜˜˜˜ ˜^˜
glm_test.c:335:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
Ui = U = (double *) calloc(nc*P, sizeof(double));
˜˜˜˜˜˜ ˜˜^˜
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c glm_test_R.c -o glm_test_R.o
glm_test_R.c:55:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sstype = TYPEOF(Snp_subset);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
glm_test_R.c:155:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *yd = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:156:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *fitted = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:157:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *prior = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:158:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *resid = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:159:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *weights = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:162:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
xb = (double *) R_alloc(N*M, sizeof(double));
˜˜˜˜˜˜˜ ˜^˜
glm_test_R.c:269:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sntype = TYPEOF(snpNames);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
glm_test_R.c:424:25: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE tests_type = TYPEOF(Tests);
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
glm_test_R.c:486:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int mallowed = N * REAL(MissAllow)[0];
˜˜˜˜˜˜˜˜ ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
glm_test_R.c:490:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *zw = (double *) R_alloc(N*test_size, sizeof(double));
˜˜˜˜˜˜˜ ˜^˜˜˜˜˜˜˜˜˜
glm_test_R.c:491:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *prior = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:492:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *resid = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:493:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *resid_all = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:494:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *weights = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:495:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *weights_all = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:496:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *fitted = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:497:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *fitted_all = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:500:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
xb = (double *) R_alloc(N*M, sizeof(double));
˜˜˜˜˜˜˜ ˜^˜
glm_test_R.c:501:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
xb_all = (double *) R_alloc(N*M, sizeof(double));
˜˜˜˜˜˜˜ ˜^˜
glm_test_R.c:592:8: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
len = strlen(testname);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
21 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c gzio.c -o gzio.o
gzio.c:308:40: warning: implicit conversion changes signedness: 'uInt' (aka 'unsigned int') to 'int' [-Wsign-conversion]
s->transparent = s->stream.avail_in;
˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
gzio.c:413:26: warning: implicit conversion loses integer precision: 'int' to 'Byte' (aka 'unsigned char') [-Wconversion]
*next_out++ = s->back;
˜ ˜˜˜^˜˜˜
gzio.c:798:20: warning: implicit conversion changes signedness: 'int' to 'uInt' (aka 'unsigned int') [-Wsign-conversion]
size = gzwrite(file, s->inbuf, size);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c hash_index.c -o hash_index.o
hash_index.c:58:10: warning: implicit conversion changes signedness: 'const char' to 'unsigned int' [-Wsign-conversion]
h += *s;
˜˜ ^˜
hash_index.c:60:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return (h & bitmask);
˜ ^˜˜˜˜˜˜
hash_index.c:69:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
result->nodelist =(t_node *)calloc(hash_size, sizeof(t_node));
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
hash_index.c:82:17: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int idx = hash(name, db->bitmask);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
hash_index.c:108:27: warning: implicit conversion changes signedness: 'int' to 'char' [-Wsign-conversion]
*dup_low = (*dup_low) & 0xDF;
˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c ibs.c -o ibs.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c in.c -o in.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c infback.c -o infback.o
infback.c:55:20: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
state->wbits = windowBits;
˜ ^˜˜˜˜˜˜˜˜˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c inffast.c -o inffast.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c inflate.c -o inflate.o
inflate.c:137:36: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if (bits > 16 || state->bits + bits > 32) return Z_STREAM_ERROR;
˜ ^˜˜˜
inflate.c:139:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
state->hold += value << state->bits;
˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
inflate.c:140:20: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
state->bits += bits;
˜˜ ^˜˜˜
inflate.c:711:62: warning: implicit conversion loses integer precision: 'unsigned int' to 'Bytef' (aka 'unsigned char') [-Wconversion]
state->head->name[state->length++] = len;
˜ ^˜˜
inflate.c:732:65: warning: implicit conversion loses integer precision: 'unsigned int' to 'Bytef' (aka 'unsigned char') [-Wconversion]
state->head->comment[state->length++] = len;
˜ ^˜˜
inflate.c:1148:60: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
strm->data_type = state->bits + (state->last ? 64 : 0) +
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c inftrees.c -o inftrees.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c input.c -o input.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c inputNew.c -o inputNew.o
inputNew.c:336:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int lfn = strlen(filename);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
inputNew.c:635:14: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int la = strlen(a), lb = strlen(b);
˜˜ ^˜˜˜˜˜˜˜˜
inputNew.c:635:30: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int la = strlen(a), lb = strlen(b);
˜˜ ^˜˜˜˜˜˜˜˜
inputNew.c:663:13: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
char cu = toupper(c);
˜˜ ^˜˜˜˜˜˜˜˜˜
inputNew.c:688:19: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
lenf = lenb = strlen(front);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
inputNew.c:709:16: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int lenx = strlen(xi);
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
inputNew.c:855:28: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(matrix, 0x00, N*sizeof(unsigned char));
^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
inputNew.c:855:28: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(matrix, 0x00, N*sizeof(unsigned char));
^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
8 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c input_unsorted.c -o input_unsorted.o
input_unsorted.c:241:13: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
*gtype = gt;
˜ ^˜
input_unsorted.c:250:16: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
*gtype = gt;
˜ ^˜
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c ld_graphic_eps.c -o ld_graphic_eps.o
ld_graphic_eps.c:81:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_HEADER, strlen(EPS_HEADER), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:83:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_PROLOG_1, strlen(EPS_PROLOG_1), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:84:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_PROLOG_2, strlen(EPS_PROLOG_2), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:85:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_PROLOG_3, strlen(EPS_PROLOG_3), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:86:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_PROLOG_4, strlen(EPS_PROLOG_4), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:87:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_PROLOG_5, strlen(EPS_PROLOG_5), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:88:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_PROLOG_6, strlen(EPS_PROLOG_6), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:89:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_PROLOG_7, strlen(EPS_PROLOG_7), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:90:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_PROLOG_8, strlen(EPS_PROLOG_8), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:91:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_PROLOG_9, strlen(EPS_PROLOG_9), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:92:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_PROLOG_10, strlen(EPS_PROLOG_10), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:93:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_PROLOG_11, strlen(EPS_PROLOG_11), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:94:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_PROLOG_12, strlen(EPS_PROLOG_12), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:97:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_BODY, strlen(EPS_BODY), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ld_graphic_eps.c:122:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
junk = fwrite(EPS_ENDING, strlen(EPS_ENDING), 1, gh->fp);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
15 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c ld_with.c -o ld_with.o
ld_with.c:76:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(REAL(dprime), 0, cols * n_select * sizeof(double));
˜˜˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
ld_with.c:76:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(REAL(dprime), 0, cols * n_select * sizeof(double));
˜˜˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
ld_with.c:77:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(REAL(rmisc) , 0, cols * n_select * sizeof(double));
˜˜˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
ld_with.c:77:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(REAL(rmisc) , 0, cols * n_select * sizeof(double));
˜˜˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
ld_with.c:78:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(REAL(lod) , 0, cols * n_select * sizeof(double));
˜˜˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
ld_with.c:78:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(REAL(lod) , 0, cols * n_select * sizeof(double));
˜˜˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c mla.c -o mla.o
mla.c:28:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
swy = (double *) calloc(nstrata, sizeof(double));
˜˜˜˜˜˜ ^˜˜˜˜˜˜
mla.c:29:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
swt = (double *) calloc(nstrata, sizeof(double));
˜˜˜˜˜˜ ^˜˜˜˜˜˜
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c outdata.c -o outdata.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c pairwise_linkage.c -o pairwise_linkage.o
pairwise_linkage.c:133:27: warning: 'memset' call operates on objects of type 'int' while the size is based on a different type 'int *' [-Wsizeof-pointer-memaccess]
memset(count, 0, sizeof(count));
˜˜˜˜˜ ^˜˜˜˜
pairwise_linkage.c:133:27: note: did you mean to dereference the argument to 'sizeof' (and multiply it by the number of elements)?
memset(count, 0, sizeof(count));
^˜˜˜˜
pairwise_linkage.c:174:27: warning: 'memset' call operates on objects of type 'int' while the size is based on a different type 'int *' [-Wsizeof-pointer-memaccess]
memset(count, 0, sizeof(count));
˜˜˜˜˜ ^˜˜˜˜
pairwise_linkage.c:174:27: note: did you mean to dereference the argument to 'sizeof' (and multiply it by the number of elements)?
memset(count, 0, sizeof(count));
^˜˜˜˜
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c read_chiamo.c -o read_chiamo.o
read_chiamo.c:71:23: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
float f_threshold = 0.9;
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
read_chiamo.c:89:17: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
f_threshold = REAL(threshold)[0];
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_chiamo.c:153:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
char *current_line = malloc(line_buffer_size);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_chiamo.c:196:58: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
cur_content_ptr->snps = (char *)calloc(sizeof(char), n_samples);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c read_hapmap.c -o read_hapmap.o
read_hapmap.c:107:34: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32]
int a_offset = strlen(alleles) - 2;
˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_hapmap.c:268:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
if (strncmp(current_line, HEADER_BEGINNING, header_skip)) {
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
read_hapmap.c:271:53: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
if (strncmp(current_line, HEADER_BEGINNING_ALT, header_skip)) {
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
read_hapmap.c:350:58: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
cur_content_ptr->snps = (char *)calloc(sizeof(char), n_samples);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
read_hapmap.c:385:28: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
unsigned char a = guesses >> 8;
˜ ˜˜˜˜˜˜˜˜^˜˜˜
read_hapmap.c:400:25: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
unsigned char a = *line_ptr++;
˜ ^˜˜˜˜˜˜˜˜˜˜
read_hapmap.c:401:25: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
unsigned char b = *line_ptr++;
˜ ^˜˜˜˜˜˜˜˜˜˜
read_hapmap.c:402:27: warning: implicit conversion changes signedness: 'unsigned char' to 'char' [-Wsign-conversion]
if (!expected_gtype(a) || !expected_gtype(b)) {
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
read_hapmap.c:402:49: warning: implicit conversion changes signedness: 'unsigned char' to 'char' [-Wsign-conversion]
if (!expected_gtype(a) || !expected_gtype(b)) {
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
read_hapmap.c:478:50: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
INTEGER(supp_pos)[i_snps] = cur_content_ptr->pos;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
10 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c read_pedfile.c -o read_pedfile.o
read_pedfile.c:150:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
char *current_line = malloc(line_buffer_size);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_pedfile.c:152:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
char *snp_summary = calloc(n_snps + 3,1);
˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜
read_pedfile.c:196:65: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
cur_content_ptr->snps = (char *)calloc(sizeof(char), n_snps + 3);
˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c read_signals.c -o read_signals.o
read_signals.c:50:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
char *line_buffer = (char *)malloc(buffersize);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c readped.c -o readped.o
readped.c:96:17: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
acodes[0] = a1;
˜ ^˜
readped.c:100:19: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
acodes[1] = a2;
˜ ^˜
readped.c:109:14: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
acodes[1] = a2;
˜ ^˜
readped.c:114:19: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
acodes[1] = a1;
˜ ^˜
readped.c:118:19: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
acodes[1] = a1;
˜ ^˜
readped.c:193:17: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
acodes[i] = mval;
˜ ^˜˜˜
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c sdfpw.c -o sdfpw.o
sdfpw.c:400:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(REAL(dprime), 0, width * i_depth * sizeof(double));
˜˜˜˜˜˜^˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
sdfpw.c:400:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(REAL(dprime), 0, width * i_depth * sizeof(double));
˜˜˜˜˜˜^˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
sdfpw.c:401:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(REAL(rmisc) , 0, width * i_depth * sizeof(double));
˜˜˜˜˜˜^˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
sdfpw.c:401:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(REAL(rmisc) , 0, width * i_depth * sizeof(double));
˜˜˜˜˜˜^˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
sdfpw.c:402:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(REAL(lod) , 0, width * i_depth * sizeof(double));
˜˜˜˜˜˜^˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
sdfpw.c:402:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(REAL(lod) , 0, width * i_depth * sizeof(double));
˜˜˜˜˜˜^˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c single_snp_tests.c -o single_snp_tests.o
single_snp_tests.c:36:20: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE stype = TYPEOF(Stratum);
˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
single_snp_tests.c:90:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sutype = TYPEOF(Subset);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
single_snp_tests.c:105:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sstype = TYPEOF(Snp_subset);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
single_snp_tests.c:150:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double **UV = (double **) calloc(nstrata, sizeof(double *));
˜˜˜˜˜˜ ^˜˜˜˜˜˜
single_snp_tests.c:217:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double **UVM = (double **) calloc(nstrata, sizeof(double *));
˜˜˜˜˜˜ ^˜˜˜˜˜˜
single_snp_tests.c:218:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double **UVF = (double **) calloc(nstrata, sizeof(double *));
˜˜˜˜˜˜ ^˜˜˜˜˜˜
single_snp_tests.c:316:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sntype = TYPEOF(snpNames);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
7 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c snp_summary.c -o snp_summary.o
snp_summary.c:96:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
int *obs = (int *) R_alloc(N, sizeof(int));
˜˜˜˜˜˜˜ ^
snp_summary.c:131:18: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
calls[j] = nv+ny;
˜ ˜˜^˜˜
snp_summary.c:132:23: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
calls_female[j] = nv;
˜ ^˜
snp_summary.c:233:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
int *obs = (int *) R_alloc(N, sizeof(int));
˜˜˜˜˜˜˜ ^
snp_summary.c:259:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
calls[j] = nv;
˜ ^˜
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c snpmpy.c -o snpmpy.o
snpmpy.c:83:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, P*M*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
snpmpy.c:83:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, P*M*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
snpmpy.c:201:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, N*P*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
snpmpy.c:201:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, N*P*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c solve_cubic.c -o solve_cubic.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c solve_quadratic.c -o solve_quadratic.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c structure.c -o structure.o
structure.c:89:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
Ti = (int *) calloc(N, sizeof(int));
˜˜˜˜˜˜ ^
structure.c:90:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(Ti, 0x00, N*sizeof(int));
^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
structure.c:90:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(Ti, 0x00, N*sizeof(int));
^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
structure.c:91:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
Tk = (int *) calloc(M, sizeof(int));
˜˜˜˜˜˜ ^
structure.c:92:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(Tk, 0x00, M*sizeof(int));
^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
structure.c:92:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(Tk, 0x00, M*sizeof(int));
^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
structure.c:110:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, N*N*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
structure.c:110:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, N*N*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
structure.c:340:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, N*N*sizeof(int));
˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
structure.c:340:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, N*N*sizeof(int));
˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
structure.c:417:24: warning: implicit conversion changes signedness: 'R_len_t' (aka 'int') to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, Nout*sizeof(double));
^˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
structure.c:417:24: warning: implicit conversion changes signedness: 'R_len_t' (aka 'int') to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, Nout*sizeof(double));
^˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
12 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c trees.c -o trees.o
trees.c:527:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
s->opt_len += (ulg)f * (bits + xbits);
˜ ˜˜˜˜˜^˜˜˜˜˜˜
trees.c:528:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if (stree) s->static_len += (ulg)f * (stree[n].Len + xbits);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
trees.c:561:31: warning: implicit conversion changes signedness: 'long' to 'unsigned long' [-Wsign-conversion]
*(long)tree[m].Freq;
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:591:60: warning: implicit conversion loses integer precision: 'int' to 'ush' (aka 'unsigned short') [-Wconversion]
next_code[bits] = code = (code + bl_count[bits-1]) << 1;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
trees.c:604:24: warning: implicit conversion loses integer precision: 'unsigned int' to 'ush' (aka 'unsigned short') [-Wconversion]
tree[n].Code = bi_reverse(next_code[len]++, len);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:773:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
do { send_code(s, curlen, s->bl_tree); } while (--count != 0);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:773:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
do { send_code(s, curlen, s->bl_tree); } while (--count != 0);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:777:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, curlen, s->bl_tree); count--;
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:777:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, curlen, s->bl_tree); count--;
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:780:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REP_3_6, s->bl_tree); send_bits(s, count-3, 2);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:780:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REP_3_6, s->bl_tree); send_bits(s, count-3, 2);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:780:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REP_3_6, s->bl_tree); send_bits(s, count-3, 2);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:780:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REP_3_6, s->bl_tree); send_bits(s, count-3, 2);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:783:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_3_10, s->bl_tree); send_bits(s, count-3, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:783:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_3_10, s->bl_tree); send_bits(s, count-3, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:783:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_3_10, s->bl_tree); send_bits(s, count-3, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:783:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_3_10, s->bl_tree); send_bits(s, count-3, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:786:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_11_138, s->bl_tree); send_bits(s, count-11, 7);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:786:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_11_138, s->bl_tree); send_bits(s, count-11, 7);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:786:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_11_138, s->bl_tree); send_bits(s, count-11, 7);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:786:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_11_138, s->bl_tree); send_bits(s, count-11, 7);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:826:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
s->opt_len += 3*(max_blindex+1) + 5+5+4;
˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
trees.c:848:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, lcodes-257, 5); /* not +255 as stated in appnote.txt */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:848:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, lcodes-257, 5); /* not +255 as stated in appnote.txt */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:849:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, dcodes-1, 5);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:849:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, dcodes-1, 5);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:850:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, blcodes-4, 4); /* not -3 as stated in appnote.txt */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:850:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, blcodes-4, 4); /* not -3 as stated in appnote.txt */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:853:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, s->bl_tree[bl_order[rank]].Len, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:853:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, s->bl_tree[bl_order[rank]].Len, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:873:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, (STORED_BLOCK<<1)+eof, 3); /* send block type */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:873:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, (STORED_BLOCK<<1)+eof, 3); /* send block type */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:895:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, STATIC_TREES<<1, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:895:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, STATIC_TREES<<1, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:896:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, END_BLOCK, static_ltree);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:896:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, END_BLOCK, static_ltree);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:907:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, STATIC_TREES<<1, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:907:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, STATIC_TREES<<1, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:908:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, END_BLOCK, static_ltree);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:908:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, END_BLOCK, static_ltree);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:988:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, (STATIC_TREES<<1)+eof, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:988:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, (STATIC_TREES<<1)+eof, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:994:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, (DYN_TREES<<1)+eof, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:994:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, (DYN_TREES<<1)+eof, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1087:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, lc, ltree); /* send a literal byte */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:1087:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, lc, ltree); /* send a literal byte */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1092:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, code+LITERALS+1, ltree); /* send the length code */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:1092:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, code+LITERALS+1, ltree); /* send the length code */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1096:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, lc, extra); /* send the extra length bits */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:1096:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, lc, extra); /* send the extra length bits */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1102:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, code, dtree); /* send the distance code */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:1102:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, code, dtree); /* send the distance code */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1105:25: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
dist -= base_dist[code];
˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:1106:30: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
send_bits(s, dist, extra); /* send the extra distance bits */
˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
trees.c:220:15: note: expanded from macro 'send_bits'
int val = value;\
^
trees.c:1106:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, dist, extra); /* send the extra distance bits */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:1106:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, dist, extra); /* send the extra distance bits */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1116:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, END_BLOCK, ltree);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:223:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:1116:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, END_BLOCK, ltree);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:167:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1217:21: warning: implicit conversion changes signedness: 'charf' (aka 'char') to 'Bytef' (aka 'unsigned char') [-Wsign-conversion]
put_byte(s, *buf++);
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
./deflate.h:268:57: note: expanded from macro 'put_byte'
#define put_byte(s, c) {s->pending_buf[s->pending++] = (c);}
^
59 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c uncompr.c -o uncompr.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c zutil.c -o zutil.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o chopsticks.so adler32.o bind.o compress.o crc32.o deflate.o force_hom.o glm_test.o glm_test_R.o gzio.o hash_index.o ibs.o in.o infback.o inffast.o inflate.o inftrees.o input.o inputNew.o input_unsorted.o ld_graphic_eps.o ld_with.o mla.o outdata.o pairwise_linkage.o read_chiamo.o read_hapmap.o read_pedfile.o read_signals.o readped.o sdfpw.o single_snp_tests.o snp_summary.o snpmpy.o solve_cubic.o solve_quadratic.o structure.o trees.o uncompr.o zutil.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/chopsticks.buildbin-libdir/chopsticks/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (chopsticks)
>>>>>>>
>>>>>>> FIXING LINKS FOR chopsticks.buildbin-libdir/chopsticks/libs//chopsticks.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "chopsticks.buildbin-libdir/chopsticks/libs//chopsticks.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "chopsticks.buildbin-libdir/chopsticks/libs//chopsticks.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "chopsticks.buildbin-libdir/chopsticks/libs//chopsticks.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "chopsticks.buildbin-libdir/chopsticks/libs//chopsticks.so"