BioC 2.12: CHECK report for cghMCR on moscato2

Package: cghMCR

Version: 1.18.0

Command: rm -rf cghMCR.buildbin-libdir && mkdir cghMCR.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cghMCR.buildbin-libdir cghMCR_1.18.0.tar.gz >cghMCR-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=cghMCR.buildbin-libdir --install="check:cghMCR-install.out" --force-multiarch --no-vignettes --timings cghMCR_1.18.0.tar.gz && mv cghMCR.buildbin-libdir/* cghMCR.Rcheck/ && rmdir cghMCR.buildbin-libdir

StartedAt: 2013-10-09 01:27:46 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 01:32:10 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 264.5 seconds

RetCode: 0

Status:  OK

CheckDir: cghMCR.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/cghMCR.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cghMCR/DESCRIPTION' ... OK
* this is package 'cghMCR' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cghMCR' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.1Mb
  sub-directories of 1Mb or more:
    sampleData  97.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [15s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
mergeMCRProbes  7.5      0     7.5
** running examples for arch 'x64' ... [12s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
mergeMCRProbes 5.61      0    5.61
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-bioc/meat/cghMCR.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'cghMCR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'cghMCR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cghMCR' as cghMCR_1.18.0.zip
* DONE (cghMCR)