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Package 24/671HostnameOS / ArchBUILDCHECKBUILD BIN
affyPLM 1.36.0
Ben Bolstad
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/affyPLM
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: affyPLM
Version: 1.36.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch affyPLM_1.36.0.tar.gz
StartedAt: 2013-05-01 02:00:38 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 02:09:44 -0700 (Wed, 01 May 2013)
EllapsedTime: 545.8 seconds
RetCode: 0
Status:  OK 
CheckDir: affyPLM.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/affyPLM.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'affyPLM/DESCRIPTION' ... OK
* this is package 'affyPLM' version '1.36.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'affyPLM' can be installed ... [19s/21s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
show,PLMset: warning in ls(env = cdf.env): partial argument match of
  'env' to 'envir'
* checking Rd files ... NOTE
prepare_Rd: MAplot.Rd:11-13: Dropping empty section \usage
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [139s/143s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
threestep         53.532  0.799  55.576
fitPLM            25.587  1.304  28.074
PLMset2exprSet    24.457  0.496  25.623
preprocess         7.267  0.400   7.833
bg.correct.LESN    7.167  0.316   7.760
normalize.scaling  6.013  0.363   6.545
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'C_code_tests.R' [3s/4s]
  Running 'PLM_tests.R' [1s/1s]
  Running 'preprocess_tests.R' [56s/58s]
  Running 'threestepPLM_tests.R' [167s/172s]
 [228s/235s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/affyPLM.Rcheck/00check.log'
for details.

affyPLM.Rcheck/00install.out:

* installing *source* package 'affyPLM' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c LESN.c -o LESN.o
LESN.c:90:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    qsort(buffer,rows,sizeof(double), (int(*)(const void*, const void*))sort_double);
    ˜˜˜˜˜        ^˜˜˜
LESN.c:226:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    qsort(buffer,rows,sizeof(double), (int(*)(const void*, const void*))sort_double);
    ˜˜˜˜˜        ^˜˜˜
LESN.c:347:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    qsort(buffer,rows,sizeof(double), (int(*)(const void*, const void*))sort_double);
    ˜˜˜˜˜        ^˜˜˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c PLM_avg_log.c -o PLM_avg_log.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c PLM_biweight.c -o PLM_biweight.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c PLM_log_avg.c -o PLM_log_avg.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c PLM_medianPM.c -o PLM_medianPM.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c PLM_median_logPM.c -o PLM_median_logPM.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c PLM_medianpolish.c -o PLM_medianpolish.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c PLM_modelmatrix.c -o PLM_modelmatrix.o
PLM_modelmatrix.c:611:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  current->X = Realloc(current->X,n*p, double);
               ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
PLM_modelmatrix.c:615:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  current->cur_params = Realloc(current->cur_params,p,double);
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
PLM_modelmatrix.c:616:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  current->cur_se_estimates = Realloc(current->cur_se_estimates,p,double);
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
PLM_modelmatrix.c:617:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  current->cur_weights = Realloc(current->cur_weights,n,double);
                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
PLM_modelmatrix.c:618:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  current->cur_resids = Realloc(current->cur_resids,n,double);
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
PLM_modelmatrix.c:619:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  current->cur_varcov = Realloc(current->cur_varcov,p*p,double);
                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c SCAB.c -o SCAB.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c chipbackground.c -o chipbackground.o
chipbackground.c:379:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    qsort(data_by_sector[j],cur_n[j],sizeof(double),(int(*)(const void*, const void*))sort_double);
    ˜˜˜˜˜                   ^˜˜˜˜˜˜˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c common_types.c -o common_types.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c do_PLMrlm.c -o do_PLMrlm.o
do_PLMrlm.c:231:73: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      current->cur_params = Realloc(current->cur_params,current->nprobes+data->n_arrays,double);
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMrlm.c:232:85: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      current->cur_se_estimates = Realloc(current->cur_se_estimates,current->nprobes+data->n_arrays,double);
                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMrlm.c:676:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        cur_rows = Realloc(cur_rows, max_nrows, int);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMrlm.c:689:14: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
      size = strlen(first);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
do_PLMrlm.c:705:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  size = strlen(first);
       ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c do_PLMrma.c -o do_PLMrma.o
do_PLMrma.c:293:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        current->cur_rows = Realloc(current->cur_rows, max_nrows, int);
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMrma.c:304:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        current->cur_weights = Realloc(current->cur_weights,current->n,double);
                               ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMrma.c:305:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        current->cur_resids = Realloc(current->cur_resids,current->n,double);
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMrma.c:306:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        current->cur_params  = Realloc(current->cur_params,current->p,double);
                               ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMrma.c:307:74: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        current->cur_se_estimates  = Realloc(current->cur_se_estimates,current->p,double);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMrma.c:334:67: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     current->cur_weights = Realloc(current->cur_weights,current->n,double);
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMrma.c:335:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     current->cur_resids = Realloc(current->cur_resids,current->n,double);
                           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMrma.c:336:66: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     current->cur_params  = Realloc(current->cur_params,current->p,double);
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMrma.c:337:78: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     current->cur_se_estimates  = Realloc(current->cur_se_estimates,current->p,double);
                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMrma.c:319:14: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
      size = strlen(first);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
do_PLMrma.c:348:11: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   size = strlen(first);
        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
11 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c do_PLMthreestep.c -o do_PLMthreestep.o
do_PLMthreestep.c:201:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        current->cur_rows = Realloc(current->cur_rows, max_nrows, int);
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMthreestep.c:211:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        current->cur_resids = Realloc(current->cur_resids,data->cols*current->nprobes,double);
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMthreestep.c:238:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    current->cur_resids = Realloc(current->cur_resids,data->cols*current->nprobes,double);
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
do_PLMthreestep.c:225:14: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
      size = strlen(first);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
do_PLMthreestep.c:246:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  size = strlen(first);
       ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c idealmismatch.c -o idealmismatch.o
idealmismatch.c:88:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        cur_rows = Realloc(cur_rows,current_buf_size,int);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
idealmismatch.c:89:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        buffer = Realloc(buffer,current_buf_size,double);
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
idealmismatch.c:201:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        cur_rows = Realloc(cur_rows,current_buf_size,int);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
idealmismatch.c:202:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        buffer = Realloc(buffer,current_buf_size,double);  
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c lm_threestep.c -o lm_threestep.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c matrix_functions.c -o matrix_functions.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c nthLargestPM.c -o nthLargestPM.o
nthLargestPM.c:62:16: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  qsort(buffer,length,sizeof(double), (int(*)(const void*, const void*))sort_double);
  ˜˜˜˜˜        ^˜˜˜˜˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c preprocess.c -o preprocess.o
preprocess.c:506:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      ProbeNames = (const char **)Realloc(ProbeNames,2*rows,const char *);
                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c psi_fns.c -o psi_fns.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c qnorm_probeset.c -o qnorm_probeset.o
qnorm_probeset.c:137:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            cur_rows = Realloc(cur_rows, max_nrows, int);
                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
qnorm_probeset.c:145:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            cur_rows = Realloc(cur_rows, max_nrows, int);
                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
qnorm_probeset.c:198:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            cur_rows = Realloc(cur_rows, max_nrows, int);
                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
qnorm_probeset.c:206:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            cur_rows = Realloc(cur_rows, max_nrows, int);
                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c read_rmaexpress.c -o read_rmaexpress.o
read_rmaexpress.c:48:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(int),n,instream);
           ˜˜˜˜˜                         ^
read_rmaexpress.c:102:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(double),n,instream);
           ˜˜˜˜˜                            ^
read_rmaexpress.c:119:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(char),n,instream);
           ˜˜˜˜˜                          ^
read_rmaexpress.c:375:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(int)*n);
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_rmaexpress.c:375:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(int)*n);
                                                  ˜^
read_rmaexpress.c:395:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(double)*n);
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_rmaexpress.c:395:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(double)*n);
                                                     ˜^
read_rmaexpress.c:412:13: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result =  gzread(instream,destination,sizeof(char)*n);
         ˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_rmaexpress.c:412:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result =  gzread(instream,destination,sizeof(char)*n);
                                                    ˜^
9 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c rlm_PLM.c -o rlm_PLM.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c rlm_threestep.c -o rlm_threestep.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c rmaPLM_pseudo.c -o rmaPLM_pseudo.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c rma_PLM.c -o rma_PLM.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c rma_common.c -o rma_common.o
rma_common.c:65:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(buffer,x,length*sizeof(double));
                  ^˜˜˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
rma_common.c:65:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(buffer,x,length*sizeof(double));
                  ^˜˜˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
rma_common.c:60:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
rma_common.c:107:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(buffer,x,length*sizeof(double));
                  ^˜˜˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
rma_common.c:107:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(buffer,x,length*sizeof(double));
                  ^˜˜˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c scaling.c -o scaling.o
scaling.c:76:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    qsort(buffer,length,sizeof(double), (int(*)(const void*, const void*))sort_double);
    ˜˜˜˜˜        ^˜˜˜˜˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c threestep.c -o threestep.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c threestep_PLM.c -o threestep_PLM.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c threestep_common.c -o threestep_common.o
threestep_common.c:60:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(buffer,x,length*sizeof(double));
                  ^˜˜˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
threestep_common.c:60:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(buffer,x,length*sizeof(double));
                  ^˜˜˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c threestep_summary.c -o threestep_summary.o
threestep_summary.c:94:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        cur_rows = Realloc(cur_rows, max_nrows, int);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
threestep_summary.c:107:14: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
      size = strlen(first);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
threestep_summary.c:121:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  size = strlen(first);
       ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c threestep_summary_methods.c -o threestep_summary_methods.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/preprocessCore/include"   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c transfns.c -o transfns.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o affyPLM.so LESN.o PLM_avg_log.o PLM_biweight.o PLM_log_avg.o PLM_medianPM.o PLM_median_logPM.o PLM_medianpolish.o PLM_modelmatrix.o SCAB.o chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o idealmismatch.o lm_threestep.o matrix_functions.o nthLargestPM.o preprocess.o psi_fns.o qnorm_probeset.o read_rmaexpress.o rlm_PLM.o rlm_threestep.o rmaPLM_pseudo.o rma_PLM.o rma_common.o scaling.o threestep.o threestep_PLM.o threestep_common.o threestep_summary.o threestep_summary_methods.o transfns.o -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/affyPLM.Rcheck/affyPLM/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'affyPLM'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (affyPLM)

affyPLM.Rcheck/affyPLM-Ex.timings:

nameusersystemelapsed
PLMset2exprSet24.457 0.49625.623
bg.correct.LESN7.1670.3167.760
fitPLM25.587 1.30428.074
normalize.exprSet2.2840.0912.436
normalize.scaling6.0130.3636.545
preprocess7.2670.4007.833
rmaPLM0.9710.1191.120
threestep53.532 0.79955.576
threestepPLM0.4570.0370.537