VegaMC 2.4.0 Sandro Morganella
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/VegaMC | Last Changed Rev: 75263 / Revision: 76155 | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=VegaMC.buildbin-libdir VegaMC_2.4.0.tar.gz'
>>>>>>>
* installing *source* package 'VegaMC' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c run_vegaMC.c -o run_vegaMC.o
run_vegaMC.c:172:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
fwrite(line, len, 1, file);
˜˜˜˜˜˜ ^˜˜
run_vegaMC.c:171:11: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
len = strlen(line);
˜ ^˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:227:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
float *null_dist_loss = malloc(sizeof(float) * (num_samples + 1));
˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
run_vegaMC.c:228:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
float *null_dist_gain = malloc(sizeof(float) * (num_samples + 1));
˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
run_vegaMC.c:229:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
float *null_dist_loh = malloc(sizeof(float) * (num_samples + 1));
˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
run_vegaMC.c:287:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
num_loss_sample = malloc(sizeof(int) * num_samples);
˜ ^˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:288:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
num_gain_sample = malloc(sizeof(int) * num_samples);
˜ ^˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:289:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
num_loh_sample = malloc(sizeof(int) * num_samples);
˜ ^˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:291:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
mean_loss = malloc(sizeof(float) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:292:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
mean_gain = malloc(sizeof(float) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:293:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
mean_loh = malloc(sizeof(float) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:380:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
float *l2_mean = malloc(sizeof(float) * (np));
˜ ^˜
run_vegaMC.c:381:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int *start = malloc(sizeof(int) * (np));
˜ ^˜
run_vegaMC.c:382:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int *end = malloc(sizeof(int) * (np));
˜ ^˜
run_vegaMC.c:383:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int *start_pos = malloc(sizeof(int) * (np));
˜ ^˜
run_vegaMC.c:384:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int *size = malloc(sizeof(int) * (np));
˜ ^˜
run_vegaMC.c:385:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
float *std = malloc(sizeof(float) * (num_samples));
˜ ^˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:387:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
float *weight = malloc(sizeof(float) * (num_samples));;
˜ ^˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:392:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
float **tmp_matrix = malloc(sizeof(float *) * num_samples);
˜ ^˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:393:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
float *tmp_v = malloc(sizeof(float) * np);
˜ ^˜
run_vegaMC.c:398:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
tmp_matrix[j] = (float *) malloc(sizeof(float) * np);
˜ ^˜
run_vegaMC.c:422:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
tmp->start = (data_ptr_int) malloc(sizeof(int) * (n_reg));
˜ ^˜˜˜˜
run_vegaMC.c:423:57: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
tmp->end = (data_ptr_int) malloc(sizeof(int) * (n_reg));
˜ ^˜˜˜˜
run_vegaMC.c:424:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
tmp->size = (data_ptr_int) malloc(sizeof(int) * (n_reg));
˜ ^˜˜˜˜
run_vegaMC.c:425:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
tmp->l2_mean = (data_ptr) malloc(sizeof(float) * (n_reg));
˜ ^˜˜˜˜
run_vegaMC.c:442:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
seg_chromosomes = malloc(sizeof(int) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:443:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
seg_start = malloc(sizeof(int) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:444:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
seg_end = malloc(sizeof(int) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:445:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
seg_size = malloc(sizeof(int) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:446:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
seg_l2_mean = malloc(sizeof(float) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:447:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
seg_loss_pval = malloc(sizeof(float) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:448:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
seg_loss_perc = malloc(sizeof(int) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:449:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
seg_gain_pval = malloc(sizeof(float) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:450:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
seg_gain_perc = malloc(sizeof(int) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:451:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
seg_loh_pval = malloc(sizeof(float) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:452:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
seg_loh_perc = malloc(sizeof(int) * num_seg_regions);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:495:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
data_tmp = malloc(sizeof(float) * (num_samples));
˜ ^˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:524:35: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
data_tmp[i - 3] = atof(elem);
˜ ^˜˜˜˜˜˜˜˜˜
run_vegaMC.c:533:63: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
temp_probe->data = (data_ptr) malloc(sizeof(float) * (num_samples));
˜ ^˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:553:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
lrr_matrix = (float **) malloc(sizeof(float *) * num_probes);
˜ ^˜˜˜˜˜˜˜˜˜
run_vegaMC.c:556:58: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
baf_matrix = (float **) malloc(sizeof(float *) * num_probes);
˜ ^˜˜˜˜˜˜˜˜˜
run_vegaMC.c:558:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
position_matrix = malloc(sizeof(int) * num_probes);
˜ ^˜˜˜˜˜˜˜˜˜
run_vegaMC.c:559:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
chromosome_matrix = malloc(sizeof(int) * num_probes);
˜ ^˜˜˜˜˜˜˜˜˜
run_vegaMC.c:560:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
chr_brks_start = malloc(sizeof(int) * num_chromosomes);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:561:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
chr_brks_end = malloc(sizeof(int) * num_chromosomes);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:570:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
lrr_matrix[i] = (float *) malloc(sizeof(float) * num_samples);
˜ ^˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:571:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
baf_matrix[i] = (float *) malloc(sizeof(float) * num_samples);
˜ ^˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:593:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
lrr_matrix[i] = (float *) malloc(sizeof(float) * num_samples);
˜ ^˜˜˜˜˜˜˜˜˜˜
run_vegaMC.c:627:20: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
beta = atof(elem);
˜ ^˜˜˜˜˜˜˜˜˜
run_vegaMC.c:639:30: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
loss_threshold = atof(elem);
˜ ^˜˜˜˜˜˜˜˜˜
run_vegaMC.c:643:30: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
gain_threshold = atof(elem);
˜ ^˜˜˜˜˜˜˜˜˜
run_vegaMC.c:651:29: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
loh_threshold = atof(elem);
˜ ^˜˜˜˜˜˜˜˜˜
run_vegaMC.c:655:29: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
loh_frequency = atof(elem);
˜ ^˜˜˜˜˜˜˜˜˜
run_vegaMC.c:663:30: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
pval_threshold = atof(elem);
˜ ^˜˜˜˜˜˜˜˜˜
run_vegaMC.c:618:18: warning: unused variable 'brkt' [-Wunused-variable]
char *elem, *brkt;
^
run_vegaMC.c:690:12: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
return sqrt(sum / (n_elem - 1));
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
56 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c sort_data.c -o sort_data.o
sort_data.c:142:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
(num_rows +
˜˜˜˜˜˜˜˜˜^
sort_data.c:146:73: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
temp_probe->data = (data_ptr) malloc(sizeof (float) * (num_cols - 3));
˜ ˜˜˜˜˜˜˜˜˜^˜˜
sort_data.c:152:65: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
temp_probe->snp = malloc(sizeof (char) * (nchar + 1));
˜ ˜˜˜˜˜˜^˜˜
sort_data.c:177:47: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
temp_probe->data[index - 3] = atof(elem);
˜ ^˜˜˜˜˜˜˜˜˜
sort_data.c:187:19: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort(probes, num_rows, sizeof (struct probe *), cmp_probes);
˜˜˜˜˜ ^˜˜˜˜˜˜˜
sort_data.c:151:25: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
nchar = strlen(elem);
˜ ^˜˜˜˜˜˜˜˜˜˜˜
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c vegaMC.c -o vegaMC.o
vegaMC.c:297:69: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
a->elements = (node_ptr) malloc(sizeof (node) * ((a->max_elems) + 1));
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
vegaMC.c:333:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
b.sum = (sum_ptr) malloc(sizeof (float) * (num_of_samples));
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
vegaMC.c:457:32: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
lambda = (heap_max(&b)->p) - EPSILON;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
vegaMC.c:458:27: warning: implicit conversion turns floating-point number into integer: 'float' to 'int' [-Wconversion]
lambda_gradient = abs(lambda);
˜˜˜ ^˜˜˜˜˜
vegaMC.c:486:60: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
tmp_lambda = update_priority(brks, brk_del.prev, weight);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜˜˜
vegaMC.c:501:64: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
tmp_lambda = update_priority(brks, brk_del.next, weight);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜^˜˜˜
vegaMC.c:519:40: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
lambda = (heap_max(&b)->p) - EPSILON;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
vegaMC.c:539:21: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
i = brk_del.next;
˜ ˜˜˜˜˜˜˜˜^˜˜˜
vegaMC.c:558:31: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
prev_id = (brks + i)->prev;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
vegaMC.c:602:53: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
tmp_sum[i] = floor(data[i][0] * ROUND_CNST) / ROUND_CNST;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
vegaMC.c:605:52: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
*(brks) = breakpoint_create(0, -1, tmp_sum, 1, -1, 1);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
vegaMC.c:614:27: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
breakpoint_create(num_of_probes, -1, tmp_sum, -1, -1, -1);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
vegaMC.c:614:59: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
breakpoint_create(num_of_probes, -1, tmp_sum, -1, -1, -1);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
vegaMC.c:614:63: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
breakpoint_create(num_of_probes, -1, tmp_sum, -1, -1, -1);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
vegaMC.c:637:17: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
c = pow(a, 2);
˜ ^˜˜˜˜˜˜˜˜
vegaMC.c:640:26: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
tmp_lambda = 0.5 * tmp_lambda;
˜ ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
vegaMC.c:642:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
breakpoint_create(i, -tmp_lambda, tmp_sum, 1, i - 1, i + 1);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
vegaMC.c:642:61: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
breakpoint_create(i, -tmp_lambda, tmp_sum, 1, i - 1, i + 1);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜^˜˜
vegaMC.c:642:68: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
breakpoint_create(i, -tmp_lambda, tmp_sum, 1, i - 1, i + 1);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜^˜˜
vegaMC.c:643:36: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
heap_insert(b, node_create(i, -tmp_lambda));
˜˜˜˜˜˜˜˜˜˜˜ ^
20 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o VegaMC.so run_vegaMC.o sort_data.o vegaMC.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/VegaMC.buildbin-libdir/VegaMC/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (VegaMC)
>>>>>>>
>>>>>>> FIXING LINKS FOR VegaMC.buildbin-libdir/VegaMC/libs//VegaMC.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "VegaMC.buildbin-libdir/VegaMC/libs//VegaMC.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "VegaMC.buildbin-libdir/VegaMC/libs//VegaMC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "VegaMC.buildbin-libdir/VegaMC/libs//VegaMC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "VegaMC.buildbin-libdir/VegaMC/libs//VegaMC.so"