Package: RTCA

Version: 1.11.1

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings RTCA_1.11.1.tar.gz

StartedAt: 2013-01-16 06:09:56 -0800 (Wed, 16 Jan 2013)

EndedAt: 2013-01-16 06:10:52 -0800 (Wed, 16 Jan 2013)

EllapsedTime: 56.8 seconds

RetCode: 0

Status:  OK

CheckDir: RTCA.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/RTCA.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTCA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTCA’ version ‘1.11.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTCA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
parseRTCA: warning in read.table(file, skip = skipnum, sep = "\t", head
  = TRUE, dec = dec, ...): partial argument match of 'head' to 'header'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘essentials.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/RTCA.Rcheck/00check.log’
for details.

* installing *source* package ‘RTCA’ ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘time’ from package ‘stats’ in package ‘RTCA’
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘RTCA’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘RTCAtransformation.Rnw’ 
   ‘aboutRTCA.Rnw’ 
** testing if installed package can be loaded

* DONE (RTCA)

name	user	system	elapsed
RTCA-class	0.356	0.004	0.362
RTCAtimeline-class	0.016	0.000	0.017
alphaNames	0.020	0.004	0.022
combineRTCA	0.400	0.000	0.402
controlView	0.440	0.004	0.448
derivativeTransform	0.296	0.004	0.299
factor2numeric	0.016	0.000	0.018
interpolationTransform	1.340	0.016	1.362
nearestTimeIndex	0.332	0.008	0.337
parseRTCA	1.120	0.012	1.134
plateView	0.496	0.008	0.500
plotGridEffect	0.624	0.000	0.624
ratioTransform	0.256	0.000	0.255
rgrTransform	0.780	0.000	0.785
sliceRTCA	0.284	0.000	0.286
smoothTransform	0.484	0.000	0.484
spectramaxImport	0.024	0.004	0.026