BioC 2.12: CHECK report for OLIN on george2

Package: OLIN

Version: 1.38.0

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings OLIN_1.38.0.tar.gz

StartedAt: 2013-10-09 03:43:49 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 03:45:42 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 112.2 seconds

RetCode: 0

Status:  OK

CheckDir: OLIN.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/OLIN.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OLIN/DESCRIPTION’ ... OK
* this is package ‘OLIN’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OLIN’ can be installed ... [5s/5s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [45s/46s] OK
Examples with CPU or elapsed time > 5s
      user system elapsed
olin 32.33  0.024  33.107
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘OLIN’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (OLIN)

name	user	system	elapsed
anovaint	0.588	0.008	0.634
anovapin	0.200	0.012	0.217
anovaplate	0.392	0.012	0.417
anovaspatial	1.020	0.016	1.110
backgroundCorrect2	1.380	0.028	1.409
bas	0.120	0.004	0.122
colorbar.mxy	0.236	0.004	0.242
fdr.int	0.012	0.000	0.010
fdr.int2	0.008	0.000	0.009
fdr.spatial	0.012	0.000	0.013
fdr.spatial2	0.012	0.000	0.012
fgbg.visu	0.176	0.004	0.183
ino	0.520	0.008	0.527
lin	1.632	0.004	1.640
m2v	0.136	0.004	0.154
ma.matrix	0.472	0.020	0.496
ma.vector	0.680	0.012	0.717
mxy.abs.plot	0.228	0.008	0.267
mxy.plot	0.184	0.008	0.192
mxy2.plot	0.316	0.000	0.318
oin	1.760	0.008	1.773
olin	32.330	0.024	33.107
p.int	0.012	0.000	0.012
p.int2	0.012	0.000	0.012
p.spatial	0.020	0.000	0.019
p.spatial2	0.012	0.000	0.012
sig.mask	0.020	0.004	0.023
sigint.plot	0.016	0.000	0.018
sigint.plot2	0.012	0.000	0.012
sigxy.plot	0.020	0.004	0.022
sigxy.plot2	0.012	0.004	0.016
v2m	0.088	0.008	0.095