BioC 2.12: CHECK report for Gviz on moscato2

Package: Gviz

Version: 1.4.5

Command: rm -rf Gviz.buildbin-libdir && mkdir Gviz.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Gviz.buildbin-libdir Gviz_1.4.5.tar.gz >Gviz-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=Gviz.buildbin-libdir --install="check:Gviz-install.out" --force-multiarch --no-vignettes --timings Gviz_1.4.5.tar.gz && mv Gviz.buildbin-libdir/* Gviz.Rcheck/ && rmdir Gviz.buildbin-libdir

StartedAt: 2013-10-09 02:32:33 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 02:40:47 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 493.5 seconds

RetCode: 0

Status: OK

CheckDir: Gviz.Rcheck

Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/Gviz.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Gviz/DESCRIPTION' ... OK
* this is package 'Gviz' version '1.4.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Gviz' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [57s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
GeneRegionTrack-class 9.42   0.05    9.52
SequenceTrack-class   8.55   0.50    9.34
AnnotationTrack-class 8.35   0.36    8.70
** running examples for arch 'x64' ... [60s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
SequenceTrack-class   9.99   0.61   10.60
GeneRegionTrack-class 9.62   0.01    9.64
AnnotationTrack-class 7.51   0.30    7.81
plotTracks            5.70   0.00    5.70
GenomeAxisTrack-class 5.55   0.02    5.56
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK


install for i386

* installing *source* package 'Gviz' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'subset' from package 'base' in package 'Gviz'
Creating a generic function for 'head' from package 'utils' in package 'Gviz'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'Gviz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Gviz' as Gviz_1.4.5.zip
* DONE (Gviz)

BioC 2.12: CHECK report for Gviz on moscato2

Summary

Command output