GeneAnswers 2.2.1
Gang Feng , Pan Du and Tian Xia
| Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/GeneAnswers | | Last Changed Rev: 75810 / Revision: 81334 | | Last Changed Date: 2013-04-19 09:55:42 -0700 (Fri, 19 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ WARNINGS ] | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/GeneAnswers.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GeneAnswers/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GeneAnswers' version '2.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GeneAnswers' can be installed ... WARNING
Found the following significant warnings:
Warning: package 'igraph' was built under R version 3.0.2
Warning: package 'igraph' was built under R version 3.0.2
Warning: package 'igraph' was built under R version 3.0.2
See 'E:/biocbld/bbs-2.12-bioc/meat/GeneAnswers.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
installed size is 35.3Mb
sub-directories of 1Mb or more:
External 32.4Mb
data 1.0Mb
doc 1.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'GeneAnswers/R/zzz.R':
.onLoad calls:
require(Biobase)
Package startup functions should not change the search path.
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [596s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
geneAnswersReadable 73.79 1.37 75.16
GeneAnswers-class 35.39 1.36 36.77
getConnectedGraph 32.81 1.56 34.37
getMultiLayerGraphIDs 32.26 1.34 33.64
geneAnswersConceptRelation 32.13 1.13 33.25
geneAnswersHeatmap 30.89 1.25 32.13
geneAnswersConceptNet 30.50 1.13 31.65
geneAnswersSort 30.62 0.97 31.59
GeneAnswers-package 30.36 1.12 31.48
geneAnswersChartPlots 29.61 1.05 30.69
geneAnswersHomoMapping 29.28 0.95 30.25
buildNet 28.53 1.06 29.60
geneAnswersConcepts 27.86 1.06 28.94
geneAnswersBuilder 26.91 0.92 27.83
getGOList 19.39 1.13 91.68
** running examples for arch 'x64' ... [580s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
geneAnswersReadable 83.81 1.63 85.46
GeneAnswers-class 44.20 2.26 46.46
getMultiLayerGraphIDs 39.11 1.66 40.76
geneAnswersHeatmap 35.85 1.50 37.35
GeneAnswers-package 35.53 1.64 37.17
geneAnswersSort 33.85 1.16 35.00
geneAnswersHomoMapping 33.54 1.30 34.84
buildNet 32.38 1.41 33.79
geneAnswersBuilder 31.92 1.17 33.10
geneAnswersConcepts 31.81 1.14 32.98
geneAnswersConceptRelation 29.91 1.45 31.35
geneAnswersChartPlots 30.22 1.10 31.32
getConnectedGraph 30.30 0.97 31.28
geneAnswersConceptNet 28.90 1.14 30.05
getGOList 19.61 0.78 20.39
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
'E:/biocbld/bbs-2.12-bioc/meat/GeneAnswers.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'GeneAnswers' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: package 'igraph' was built under R version 3.0.2
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: package 'igraph' was built under R version 3.0.2
install for x64
* installing *source* package 'GeneAnswers' ...
** testing if installed package can be loaded
Warning: package 'igraph' was built under R version 3.0.2
* MD5 sums
packaged installation of 'GeneAnswers' as GeneAnswers_2.2.1.zip
* DONE (GeneAnswers)