BioC 2.12: BUILD BIN report for GRENITS on pelham

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GRENITS.buildbin-libdir GRENITS_1.12.0.tar.gz'
>>>>>>> 

* installing *source* package 'GRENITS' ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include"   -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c AR1_Gauss_biocond.cc -o AR1_Gauss_biocond.o
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:130:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        switch (size - i){                          
                     ˜ ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:190:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:209:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:237:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:245:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:266:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:274:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:311:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:312:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:319:22: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_VECTOR_ELT( x, i, element ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:320:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ; 
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:343:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:344:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:484:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( LGLSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:443:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2967:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2968:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:448:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2228:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2229:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:458:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpMat_iterators_meat.hpp:393:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:462:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpSubview_iterators_meat.hpp:581:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:50:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:173:76: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        unary_call( Language call_, int index ) : call(call_), proxy(call_,index){}
                                                               ˜˜˜˜˜       ^˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:91: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                             ˜˜˜˜˜˜       ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:113: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                                                   ˜˜˜˜˜˜       ^˜˜˜˜˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:60:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Datetime.h:40:40: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
                int getMicroSeconds() const { return m_us; }
                                              ˜˜˜˜˜˜ ^˜˜˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:27:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:197:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:212:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:221:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:95:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:110:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:119:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/functions.h:37:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:49:24: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32]
        return sugar::SeqLen( n ) ;
               ˜˜˜˜˜          ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
AR1_Gauss_biocond.cc:84:20: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  lambda_Exp.zeros(genes);
  ˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
AR1_Gauss_biocond.cc:103:33: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  precMatrix   = eta_s*eye<mat>(genes, genes);
                       ˜˜˜      ^˜˜˜˜
AR1_Gauss_biocond.cc:103:40: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  precMatrix   = eta_s*eye<mat>(genes, genes);
                       ˜˜˜             ^˜˜˜˜
AR1_Gauss_biocond.cc:105:29: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Y_mean       = zeros<mat>(genes, time_m+1);
                 ˜˜˜˜˜      ^˜˜˜˜
AR1_Gauss_biocond.cc:105:42: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Y_mean       = zeros<mat>(genes, time_m+1);
                 ˜˜˜˜˜             ˜˜˜˜˜˜^˜
AR1_Gauss_biocond.cc:106:36: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Yt           = Y.cols( 0,  time_m-1);
                 ˜           ˜˜˜˜˜˜^˜
AR1_Gauss_biocond.cc:107:32: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Ytplus1      = Y.cols( 1,    time_m);
                 ˜             ^˜˜˜˜˜
AR1_Gauss_biocond.cc:110:27: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  mu_mat  = repmat(mu, 1, time_m);
            ˜˜˜˜˜˜        ^˜˜˜˜˜
AR1_Gauss_biocond.cc:123:35: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    sum_gammas = accu(gamma_ij) - num_fixedON; 
                                ˜ ^˜˜˜˜˜˜˜˜˜˜
AR1_Gauss_biocond.cc:131:57: warning: implicit conversion changes signedness: 'int' to 'const unsigned int' [-Wsign-conversion]
    updateMu_AR1(mu, eta, eta_mu, B, mean_xt1, mean_xt, time_m);
    ˜˜˜˜˜˜˜˜˜˜˜˜                                        ^˜˜˜˜˜
AR1_Gauss_biocond.cc:134:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    mu_mat = repmat(mu, 1, time_m);
             ˜˜˜˜˜˜        ^˜˜˜˜˜
AR1_Gauss_biocond.cc:143:23: warning: implicit conversion changes signedness: 'int' to 'const unsigned int' [-Wsign-conversion]
                                logRosMinlogS,    genes, UpdateMe, numRegsVec, regMat);
                                                  ^˜˜˜˜
AR1_Gauss_biocond.cc:49:30: warning: unused variable 'numDiag' [-Wunused-variable]
  int           num_fixedON, numDiag, p_sqr, free_gammas;
                             ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Date *, vector<Date, allocator<Date> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DateVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Datetime *, vector<Datetime, allocator<Datetime> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DatetimeVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:506:9: note: in instantiation of member function 'arma::gemv<true, false, false>::apply' requested here
        gemv<true,         false, false>::apply(out.memptr(), B, A.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Gauss_biocond.cc:138:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:511:9: note: in instantiation of member function 'arma::gemv<false, false, false>::apply' requested here
        gemv<false,        false, false>::apply(out.memptr(), A, B.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Gauss_biocond.cc:138:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:515:9: note: in instantiation of member function 'arma::gemm<false, false, false, false>::apply' requested here
        gemm<false, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Gauss_biocond.cc:138:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:523:9: note: in instantiation of member function 'arma::gemv<true, true, false>::apply' requested here
        gemv<true,         true, false>::apply(out.memptr(), B, A.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Gauss_biocond.cc:138:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:528:9: note: in instantiation of member function 'arma::gemv<false, true, false>::apply' requested here
        gemv<false,        true, false>::apply(out.memptr(), A, B.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Gauss_biocond.cc:138:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:532:9: note: in instantiation of member function 'arma::gemm<false, false, true, false>::apply' requested here
        gemm<false, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Gauss_biocond.cc:138:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:549:9: note: in instantiation of member function 'arma::gemm<true, false, false, false>::apply' requested here
        gemm<true, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Gauss_biocond.cc:138:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:566:9: note: in instantiation of member function 'arma::gemm<true, false, true, false>::apply' requested here
        gemm<true, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Gauss_biocond.cc:138:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:583:9: note: in instantiation of member function 'arma::gemm<false, true, false, false>::apply' requested here
        gemm<false, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Gauss_biocond.cc:138:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:600:9: note: in instantiation of member function 'arma::gemm<false, true, true, false>::apply' requested here
        gemm<false, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Gauss_biocond.cc:138:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:617:9: note: in instantiation of member function 'arma::gemm<true, true, false, false>::apply' requested here
        gemm<true, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Gauss_biocond.cc:138:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:634:9: note: in instantiation of member function 'arma::gemm<true, true, true, false>::apply' requested here
        gemm<true, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Gauss_biocond.cc:138:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Gauss_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
92 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include"   -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c AR1_Student_biocond.cc -o AR1_Student_biocond.o
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:130:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        switch (size - i){                          
                     ˜ ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:190:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:209:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:237:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:245:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:266:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:274:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:311:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:312:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:319:22: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_VECTOR_ELT( x, i, element ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:320:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ; 
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:343:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:344:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:484:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( LGLSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:443:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2967:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2968:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:448:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2228:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2229:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:458:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpMat_iterators_meat.hpp:393:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:462:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpSubview_iterators_meat.hpp:581:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:50:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:173:76: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        unary_call( Language call_, int index ) : call(call_), proxy(call_,index){}
                                                               ˜˜˜˜˜       ^˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:91: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                             ˜˜˜˜˜˜       ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:113: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                                                   ˜˜˜˜˜˜       ^˜˜˜˜˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:60:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Datetime.h:40:40: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
                int getMicroSeconds() const { return m_us; }
                                              ˜˜˜˜˜˜ ^˜˜˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:27:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:197:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:212:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:221:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:95:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:110:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:119:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/functions.h:37:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:49:24: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32]
        return sugar::SeqLen( n ) ;
               ˜˜˜˜˜          ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
AR1_Student_biocond.cc:98:15: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  w_itr.zeros(genes, time_m+1, numExp);  
  ˜˜˜˜˜       ^˜˜˜˜
AR1_Student_biocond.cc:98:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  w_itr.zeros(genes, time_m+1, numExp);  
  ˜˜˜˜˜              ˜˜˜˜˜˜^˜
AR1_Student_biocond.cc:98:32: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  w_itr.zeros(genes, time_m+1, numExp);  
  ˜˜˜˜˜                        ^˜˜˜˜˜
AR1_Student_biocond.cc:101:35: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  numAccepted    = zeros<ucolvec>(genes);
                   ˜˜˜˜˜          ^˜˜˜˜
AR1_Student_biocond.cc:122:33: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  precMatrix   = eta_s*eye<mat>(genes, genes);
                       ˜˜˜      ^˜˜˜˜
AR1_Student_biocond.cc:122:40: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  precMatrix   = eta_s*eye<mat>(genes, genes);
                       ˜˜˜             ^˜˜˜˜
AR1_Student_biocond.cc:124:29: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Y_mean       = zeros<mat>(genes, time_m+1);
                 ˜˜˜˜˜      ^˜˜˜˜
AR1_Student_biocond.cc:124:42: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Y_mean       = zeros<mat>(genes, time_m+1);
                 ˜˜˜˜˜             ˜˜˜˜˜˜^˜
AR1_Student_biocond.cc:125:36: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Yt           = Y.cols( 0,  time_m-1);
                 ˜           ˜˜˜˜˜˜^˜
AR1_Student_biocond.cc:126:32: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Ytplus1      = Y.cols( 1,    time_m);
                 ˜             ^˜˜˜˜˜
AR1_Student_biocond.cc:128:30: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  mu_mat     = repmat(mu, 1, time_m);
               ˜˜˜˜˜˜        ^˜˜˜˜˜
AR1_Student_biocond.cc:147:35: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    sum_gammas = accu(gamma_ij) - num_fixedON; 
                                ˜ ^˜˜˜˜˜˜˜˜˜˜
AR1_Student_biocond.cc:155:57: warning: implicit conversion changes signedness: 'int' to 'const unsigned int' [-Wsign-conversion]
    updateMu_AR1(mu, eta, eta_mu, B, mean_xt1, mean_xt, time_m);
    ˜˜˜˜˜˜˜˜˜˜˜˜                                        ^˜˜˜˜˜
AR1_Student_biocond.cc:158:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    mu_mat = repmat(mu, 1, time_m);
             ˜˜˜˜˜˜        ^˜˜˜˜˜
AR1_Student_biocond.cc:167:23: warning: implicit conversion changes signedness: 'int' to 'const unsigned int' [-Wsign-conversion]
                                logRosMinlogS,    genes, UpdateMe, numRegsVec, regMat);
                                                  ^˜˜˜˜
AR1_Student_biocond.cc:49:30: warning: unused variable 'numDiag' [-Wunused-variable]
  int           num_fixedON, numDiag, p_sqr, free_gammas;
                             ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Date *, vector<Date, allocator<Date> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DateVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Datetime *, vector<Datetime, allocator<Datetime> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DatetimeVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:294:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eop_aux.hpp:141:16: warning: implicit conversion turns floating-point number into integer: 'float' to 'unsigned int' [-Wconversion]
    out1 = tmp1*k;
         ˜ ˜˜˜˜^˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eop_aux.hpp:156:26: note: in instantiation of member function 'arma::eop_aux_randn<unsigned int>::generate' requested here
      eop_aux_randn<eT>::generate( mem[i], mem[j] );
                         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:5167:22: note: in instantiation of member function 'arma::eop_aux_randn<unsigned int>::fill' requested here
  eop_aux_randn<eT>::fill( memptr(), n_elem );
                     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Gen_meat.hpp:102:71: note: in instantiation of member function 'arma::Mat<unsigned int>::randn' requested here
  else if(is_same_type<gen_type, gen_randn    >::value == true) { out.randn(); }
                                                                      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3424:5: note: in instantiation of member function 'arma::Gen<arma::Col<unsigned int>, arma::gen_zeros>::apply' requested here
  X.apply(*this);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Col_meat.hpp:264:12: note: in instantiation of function template specialization 'arma::Mat<unsigned int>::operator=<arma::Col<unsigned int>, arma::gen_zeros>' requested here
  Mat<eT>::operator=(X.get_ref());
           ^
AR1_Student_biocond.cc:101:18: note: in instantiation of function template specialization 'arma::Col<unsigned int>::operator=<arma::Gen<arma::Col<unsigned int>, arma::gen_zeros> >' requested here
  numAccepted    = zeros<ucolvec>(genes);
                 ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:294:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eop_aux.hpp:142:16: warning: implicit conversion turns floating-point number into integer: 'float' to 'unsigned int' [-Wconversion]
    out2 = tmp2*k;
         ˜ ˜˜˜˜^˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:506:9: note: in instantiation of member function 'arma::gemv<true, false, false>::apply' requested here
        gemv<true,         false, false>::apply(out.memptr(), B, A.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Student_biocond.cc:162:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:511:9: note: in instantiation of member function 'arma::gemv<false, false, false>::apply' requested here
        gemv<false,        false, false>::apply(out.memptr(), A, B.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Student_biocond.cc:162:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:515:9: note: in instantiation of member function 'arma::gemm<false, false, false, false>::apply' requested here
        gemm<false, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Student_biocond.cc:162:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:523:9: note: in instantiation of member function 'arma::gemv<true, true, false>::apply' requested here
        gemv<true,         true, false>::apply(out.memptr(), B, A.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Student_biocond.cc:162:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:528:9: note: in instantiation of member function 'arma::gemv<false, true, false>::apply' requested here
        gemv<false,        true, false>::apply(out.memptr(), A, B.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Student_biocond.cc:162:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:532:9: note: in instantiation of member function 'arma::gemm<false, false, true, false>::apply' requested here
        gemm<false, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Student_biocond.cc:162:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:549:9: note: in instantiation of member function 'arma::gemm<true, false, false, false>::apply' requested here
        gemm<true, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Student_biocond.cc:162:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:566:9: note: in instantiation of member function 'arma::gemm<true, false, true, false>::apply' requested here
        gemm<true, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Student_biocond.cc:162:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:583:9: note: in instantiation of member function 'arma::gemm<false, true, false, false>::apply' requested here
        gemm<false, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Student_biocond.cc:162:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:600:9: note: in instantiation of member function 'arma::gemm<false, true, true, false>::apply' requested here
        gemm<false, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Student_biocond.cc:162:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:617:9: note: in instantiation of member function 'arma::gemm<true, true, false, false>::apply' requested here
        gemm<true, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Student_biocond.cc:162:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:634:9: note: in instantiation of member function 'arma::gemm<true, true, true, false>::apply' requested here
        gemm<true, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Mat<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Mat<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:26:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times> >::Proxy' requested here
  : P1(in_A)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
AR1_Student_biocond.cc:162:26: note: in instantiation of function template specialization 'arma::operator-<arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_times>, arma::Mat<double> >' requested here
    residuals   = B * Yt - Ytplus1 + mu_mat;
                         ^
In file included from AR1_Student_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
97 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include"   -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c AR1_biocond.cc -o AR1_biocond.o
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:130:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        switch (size - i){                          
                     ˜ ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:190:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:209:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:237:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:245:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:266:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:274:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:311:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:312:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:319:22: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_VECTOR_ELT( x, i, element ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:320:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ; 
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:343:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:344:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:484:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( LGLSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:443:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2967:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2968:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:448:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2228:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2229:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:458:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpMat_iterators_meat.hpp:393:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:462:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpSubview_iterators_meat.hpp:581:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:50:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:173:76: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        unary_call( Language call_, int index ) : call(call_), proxy(call_,index){}
                                                               ˜˜˜˜˜       ^˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:91: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                             ˜˜˜˜˜˜       ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:113: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                                                   ˜˜˜˜˜˜       ^˜˜˜˜˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:60:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Datetime.h:40:40: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
                int getMicroSeconds() const { return m_us; }
                                              ˜˜˜˜˜˜ ^˜˜˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:27:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:197:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:212:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:221:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:95:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:110:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:119:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/functions.h:37:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:49:24: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32]
        return sugar::SeqLen( n ) ;
               ˜˜˜˜˜          ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
AR1_biocond.cc:75:22: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
  genes          = X.n_rows;      
                 ˜ ˜˜^˜˜˜˜˜
AR1_biocond.cc:76:22: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
  num_Conditions = X.n_cols;
                 ˜ ˜˜^˜˜˜˜˜
AR1_biocond.cc:80:32: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  xt       = X.cols( 0,  time_m-1);
             ˜           ˜˜˜˜˜˜^˜
AR1_biocond.cc:81:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  xt_plus1 = X.cols( 1,    time_m);
             ˜             ^˜˜˜˜˜
AR1_biocond.cc:105:32: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  precMatrix  = eta_s*eye<mat>(genes, genes);
                      ˜˜˜      ^˜˜˜˜
AR1_biocond.cc:105:39: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  precMatrix  = eta_s*eye<mat>(genes, genes);
                      ˜˜˜             ^˜˜˜˜
AR1_biocond.cc:106:31: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  mu_mat      = repmat(mu, 1, time_m);
                ˜˜˜˜˜˜        ^˜˜˜˜˜
AR1_biocond.cc:118:35: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    sum_gammas = accu(gamma_ij) - num_fixedON; 
                                ˜ ^˜˜˜˜˜˜˜˜˜˜
AR1_biocond.cc:129:57: warning: implicit conversion changes signedness: 'int' to 'const unsigned int' [-Wsign-conversion]
    updateMu_AR1(mu, eta, eta_mu, B, mean_xt1, mean_xt, time_m);
    ˜˜˜˜˜˜˜˜˜˜˜˜                                        ^˜˜˜˜˜
AR1_biocond.cc:132:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    mu_mat = repmat(mu, 1, time_m);
             ˜˜˜˜˜˜        ^˜˜˜˜˜
AR1_biocond.cc:137:23: warning: implicit conversion changes signedness: 'int' to 'const unsigned int' [-Wsign-conversion]
                                logRosMinlogS,    genes, UpdateMe, numRegsVec, regMat);
                                                  ^˜˜˜˜
AR1_biocond.cc:48:30: warning: unused variable 'numDiag' [-Wunused-variable]
  int           num_fixedON, numDiag, p_sqr, free_gammas;
                             ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Date *, vector<Date, allocator<Date> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DateVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Datetime *, vector<Datetime, allocator<Datetime> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DatetimeVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:506:9: note: in instantiation of member function 'arma::gemv<true, false, false>::apply' requested here
        gemv<true,         false, false>::apply(out.memptr(), B, A.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
AR1_biocond.cc:109:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C         = xt * trans(xt);
            ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:511:9: note: in instantiation of member function 'arma::gemv<false, false, false>::apply' requested here
        gemv<false,        false, false>::apply(out.memptr(), A, B.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
AR1_biocond.cc:109:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C         = xt * trans(xt);
            ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:515:9: note: in instantiation of member function 'arma::gemm<false, false, false, false>::apply' requested here
        gemm<false, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
AR1_biocond.cc:109:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C         = xt * trans(xt);
            ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:523:9: note: in instantiation of member function 'arma::gemv<true, true, false>::apply' requested here
        gemv<true,         true, false>::apply(out.memptr(), B, A.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
AR1_biocond.cc:109:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C         = xt * trans(xt);
            ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:528:9: note: in instantiation of member function 'arma::gemv<false, true, false>::apply' requested here
        gemv<false,        true, false>::apply(out.memptr(), A, B.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
AR1_biocond.cc:109:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C         = xt * trans(xt);
            ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:532:9: note: in instantiation of member function 'arma::gemm<false, false, true, false>::apply' requested here
        gemm<false, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
AR1_biocond.cc:109:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C         = xt * trans(xt);
            ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:549:9: note: in instantiation of member function 'arma::gemm<true, false, false, false>::apply' requested here
        gemm<true, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
AR1_biocond.cc:109:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C         = xt * trans(xt);
            ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:566:9: note: in instantiation of member function 'arma::gemm<true, false, true, false>::apply' requested here
        gemm<true, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
AR1_biocond.cc:109:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C         = xt * trans(xt);
            ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:583:9: note: in instantiation of member function 'arma::gemm<false, true, false, false>::apply' requested here
        gemm<false, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
AR1_biocond.cc:109:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C         = xt * trans(xt);
            ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:600:9: note: in instantiation of member function 'arma::gemm<false, true, true, false>::apply' requested here
        gemm<false, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
AR1_biocond.cc:109:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C         = xt * trans(xt);
            ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:617:9: note: in instantiation of member function 'arma::gemm<true, true, false, false>::apply' requested here
        gemm<true, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
AR1_biocond.cc:109:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C         = xt * trans(xt);
            ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:634:9: note: in instantiation of member function 'arma::gemm<true, true, true, false>::apply' requested here
        gemm<true, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
AR1_biocond.cc:109:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C         = xt * trans(xt);
            ^
In file included from AR1_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
91 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include"   -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c PSplines_biocond.cc -o PSplines_biocond.o
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:130:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        switch (size - i){                          
                     ˜ ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:190:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:209:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:237:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:245:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:266:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:274:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:311:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:312:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:319:22: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_VECTOR_ELT( x, i, element ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:320:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ; 
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:343:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:344:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:484:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( LGLSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:443:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2967:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2968:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:448:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2228:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2229:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:458:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpMat_iterators_meat.hpp:393:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:462:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpSubview_iterators_meat.hpp:581:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:50:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:173:76: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        unary_call( Language call_, int index ) : call(call_), proxy(call_,index){}
                                                               ˜˜˜˜˜       ^˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:91: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                             ˜˜˜˜˜˜       ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:113: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                                                   ˜˜˜˜˜˜       ^˜˜˜˜˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:60:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Datetime.h:40:40: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
                int getMicroSeconds() const { return m_us; }
                                              ˜˜˜˜˜˜ ^˜˜˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:27:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:197:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:212:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:221:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:95:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:110:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:119:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/functions.h:37:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:49:24: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32]
        return sugar::SeqLen( n ) ;
               ˜˜˜˜˜          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
PSplines_biocond.cc:86:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
  genes          =           X.n_rows;      
                 ˜           ˜˜^˜˜˜˜˜
PSplines_biocond.cc:87:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
  num_Conditions =           X.n_cols;
                 ˜           ˜˜^˜˜˜˜˜
PSplines_biocond.cc:91:32: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  xt       = X.cols( 0,  time_m-1);
             ˜           ˜˜˜˜˜˜^˜
PSplines_biocond.cc:92:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  xt_plus1 = X.cols( 1,    time_m);
             ˜             ^˜˜˜˜˜
PSplines_biocond.cc:133:38: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  xhat_0  = YB_full - repmat(xhat_1, time_m, 1);
                      ˜˜˜˜˜˜         ^˜˜˜˜˜
PSplines_biocond.cc:143:20: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  priorMatB.zeros(M*genes, M*genes);
  ˜˜˜˜˜˜˜˜˜       ˜^˜˜˜˜˜
PSplines_biocond.cc:143:29: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  priorMatB.zeros(M*genes, M*genes);
  ˜˜˜˜˜˜˜˜˜                ˜^˜˜˜˜˜
PSplines_biocond.cc:148:20: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  full_F_sqr.zeros(time_m, genes);
  ˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜˜
PSplines_biocond.cc:148:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  full_F_sqr.zeros(time_m, genes);
  ˜˜˜˜˜˜˜˜˜˜               ^˜˜˜˜
PSplines_biocond.cc:149:15: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  all_f.zeros(time_m, genes*genes);
  ˜˜˜˜˜       ^˜˜˜˜˜
PSplines_biocond.cc:149:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  all_f.zeros(time_m, genes*genes);
  ˜˜˜˜˜               ˜˜˜˜˜^˜˜˜˜˜
PSplines_biocond.cc:150:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  all_f_sqr.zeros(time_m, genes*genes);
  ˜˜˜˜˜˜˜˜˜       ^˜˜˜˜˜
PSplines_biocond.cc:150:32: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  all_f_sqr.zeros(time_m, genes*genes);
  ˜˜˜˜˜˜˜˜˜               ˜˜˜˜˜^˜˜˜˜˜
PSplines_biocond.cc:159:35: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    sum_gammas = accu(gamma_ij) - num_fixedON; 
                                ˜ ^˜˜˜˜˜˜˜˜˜˜
PSplines_biocond.cc:166:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    mu_mat = repmat(mu, 1, time_m);
             ˜˜˜˜˜˜        ^˜˜˜˜˜
PSplines_biocond.cc:174:63: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      getRegsVec(           regsVec, numRegsVec,      regMat, i);
      ˜˜˜˜˜˜˜˜˜˜                                              ^
PSplines_biocond.cc:175:63: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      getRegsVecBases( regsBasesVec, numRegsVec, regMatBases, i, M);
      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                                         ^
PSplines_biocond.cc:199:14: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      xhat_1(i)     = mean(YB);      
      ˜˜˜˜˜˜ ^
PSplines_biocond.cc:200:18: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      xhat_0.col(i) = YB - xhat_1(i);    
      ˜˜˜˜˜˜     ^
PSplines_biocond.cc:200:35: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      xhat_0.col(i) = YB - xhat_1(i);    
                           ˜˜˜˜˜˜ ^
PSplines_biocond.cc:208:10: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      mu(i) = mu(i) + xhat_1(i);
      ˜˜ ^
PSplines_biocond.cc:208:18: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      mu(i) = mu(i) + xhat_1(i);
              ˜˜ ^
PSplines_biocond.cc:208:30: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      mu(i) = mu(i) + xhat_1(i);
                      ˜˜˜˜˜˜ ^
PSplines_biocond.cc:45:63: warning: unused variable 'numDiag' [-Wunused-variable]
  int                 num_fixedON, nodesSpline, degreeSpline, numDiag, free_gammas;
                                                              ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Date *, vector<Date, allocator<Date> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DateVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Datetime *, vector<Datetime, allocator<Datetime> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DatetimeVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:506:9: note: in instantiation of member function 'arma::gemv<true, false, false>::apply' requested here
        gemv<true,         false, false>::apply(out.memptr(), B, A.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
PSplines_biocond.cc:131:11: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  YB_full = Y*trans(B);
          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:511:9: note: in instantiation of member function 'arma::gemv<false, false, false>::apply' requested here
        gemv<false,        false, false>::apply(out.memptr(), A, B.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
PSplines_biocond.cc:131:11: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  YB_full = Y*trans(B);
          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:515:9: note: in instantiation of member function 'arma::gemm<false, false, false, false>::apply' requested here
        gemm<false, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
PSplines_biocond.cc:131:11: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  YB_full = Y*trans(B);
          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:523:9: note: in instantiation of member function 'arma::gemv<true, true, false>::apply' requested here
        gemv<true,         true, false>::apply(out.memptr(), B, A.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
PSplines_biocond.cc:131:11: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  YB_full = Y*trans(B);
          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:528:9: note: in instantiation of member function 'arma::gemv<false, true, false>::apply' requested here
        gemv<false,        true, false>::apply(out.memptr(), A, B.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
PSplines_biocond.cc:131:11: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  YB_full = Y*trans(B);
          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:532:9: note: in instantiation of member function 'arma::gemm<false, false, true, false>::apply' requested here
        gemm<false, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
PSplines_biocond.cc:131:11: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  YB_full = Y*trans(B);
          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:549:9: note: in instantiation of member function 'arma::gemm<true, false, false, false>::apply' requested here
        gemm<true, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
PSplines_biocond.cc:131:11: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  YB_full = Y*trans(B);
          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:566:9: note: in instantiation of member function 'arma::gemm<true, false, true, false>::apply' requested here
        gemm<true, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
PSplines_biocond.cc:131:11: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  YB_full = Y*trans(B);
          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:583:9: note: in instantiation of member function 'arma::gemm<false, true, false, false>::apply' requested here
        gemm<false, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
PSplines_biocond.cc:131:11: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  YB_full = Y*trans(B);
          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:600:9: note: in instantiation of member function 'arma::gemm<false, true, true, false>::apply' requested here
        gemm<false, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
PSplines_biocond.cc:131:11: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  YB_full = Y*trans(B);
          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:617:9: note: in instantiation of member function 'arma::gemm<true, true, false, false>::apply' requested here
        gemm<true, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
PSplines_biocond.cc:131:11: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  YB_full = Y*trans(B);
          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:634:9: note: in instantiation of member function 'arma::gemm<true, true, true, false>::apply' requested here
        gemm<true, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
PSplines_biocond.cc:131:11: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  YB_full = Y*trans(B);
          ^
In file included from PSplines_biocond.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
103 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include"   -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c R_C_interface.cpp -o R_C_interface.o
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:130:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        switch (size - i){                          
                     ˜ ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:190:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:209:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:237:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:245:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:266:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:274:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:311:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:312:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:319:22: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_VECTOR_ELT( x, i, element ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:320:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ; 
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:343:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:344:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:484:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( LGLSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:443:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2967:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2968:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:448:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2228:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2229:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:458:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpMat_iterators_meat.hpp:393:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:462:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpSubview_iterators_meat.hpp:581:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:50:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:173:76: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        unary_call( Language call_, int index ) : call(call_), proxy(call_,index){}
                                                               ˜˜˜˜˜       ^˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:91: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                             ˜˜˜˜˜˜       ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:113: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                                                   ˜˜˜˜˜˜       ^˜˜˜˜˜
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:60:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Datetime.h:40:40: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
                int getMicroSeconds() const { return m_us; }
                                              ˜˜˜˜˜˜ ^˜˜˜
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:27:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:197:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:212:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:221:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:95:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:110:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:119:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/functions.h:37:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:49:24: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32]
        return sugar::SeqLen( n ) ;
               ˜˜˜˜˜          ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
R_C_interface.cpp:44:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat X_C(Xr.begin(), n, k, false);         // reuses memory and avoids extra copy
                  ˜˜˜             ^
R_C_interface.cpp:44:31: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat X_C(Xr.begin(), n, k, false);         // reuses memory and avoids extra copy
                  ˜˜˜                ^
R_C_interface.cpp:45:38: warning: implicit conversion changes signedness: 'R_len_t' (aka 'int') to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::colvec paramVec_C(yr.begin(), yr.size(), false);
                     ˜˜˜˜˜˜˜˜˜˜             ^˜˜˜˜˜˜˜˜
R_C_interface.cpp:46:37: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat Gamma_fixed(G_f.begin(), n, n, false);        // reuses memory and avoids extra copy
                  ˜˜˜˜˜˜˜˜˜˜˜              ^
R_C_interface.cpp:46:40: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat Gamma_fixed(G_f.begin(), n, n, false);        // reuses memory and avoids extra copy
                  ˜˜˜˜˜˜˜˜˜˜˜                 ^
R_C_interface.cpp:76:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat X_C(Xr.begin(), n, k, false);         // reuses memory and avoids extra copy
                  ˜˜˜             ^
R_C_interface.cpp:76:31: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat X_C(Xr.begin(), n, k, false);         // reuses memory and avoids extra copy
                  ˜˜˜                ^
R_C_interface.cpp:77:38: warning: implicit conversion changes signedness: 'R_len_t' (aka 'int') to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::colvec paramVec_C(yr.begin(), yr.size(), false);
                     ˜˜˜˜˜˜˜˜˜˜             ^˜˜˜˜˜˜˜˜
R_C_interface.cpp:78:37: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat Gamma_fixed(G_f.begin(), n, n, false);        // reuses memory and avoids extra copy
                  ˜˜˜˜˜˜˜˜˜˜˜              ^
R_C_interface.cpp:78:40: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat Gamma_fixed(G_f.begin(), n, n, false);        // reuses memory and avoids extra copy
                  ˜˜˜˜˜˜˜˜˜˜˜                 ^
R_C_interface.cpp:104:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat X_C(Xr.begin(), n, k, false);         // reuses memory and avoids extra copy
                  ˜˜˜             ^
R_C_interface.cpp:104:31: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat X_C(Xr.begin(), n, k, false);         // reuses memory and avoids extra copy
                  ˜˜˜                ^
R_C_interface.cpp:105:38: warning: implicit conversion changes signedness: 'R_len_t' (aka 'int') to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::colvec paramVec_C(yr.begin(), yr.size(), false);
                     ˜˜˜˜˜˜˜˜˜˜             ^˜˜˜˜˜˜˜˜
R_C_interface.cpp:106:37: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat Gamma_fixed(G_f.begin(), n, n, false);        // reuses memory and avoids extra copy
                  ˜˜˜˜˜˜˜˜˜˜˜              ^
R_C_interface.cpp:106:40: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat Gamma_fixed(G_f.begin(), n, n, false);        // reuses memory and avoids extra copy
                  ˜˜˜˜˜˜˜˜˜˜˜                 ^
R_C_interface.cpp:133:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat X_C(Xr.begin(), n, k, false);         // reuses memory and avoids extra copy
                  ˜˜˜             ^
R_C_interface.cpp:133:31: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat X_C(Xr.begin(), n, k, false);         // reuses memory and avoids extra copy
                  ˜˜˜                ^
R_C_interface.cpp:134:38: warning: implicit conversion changes signedness: 'R_len_t' (aka 'int') to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::colvec paramVec_C(yr.begin(), yr.size(), false);
                     ˜˜˜˜˜˜˜˜˜˜             ^˜˜˜˜˜˜˜˜
R_C_interface.cpp:135:37: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat Gamma_fixed(G_f.begin(), n, n, false);        // reuses memory and avoids extra copy
                  ˜˜˜˜˜˜˜˜˜˜˜              ^
R_C_interface.cpp:135:40: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat Gamma_fixed(G_f.begin(), n, n, false);        // reuses memory and avoids extra copy
                  ˜˜˜˜˜˜˜˜˜˜˜                 ^
R_C_interface.cpp:180:37: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat Gamma_fixed(G_f.begin(), n, n, false);        // reuses memory and avoids extra copy
                  ˜˜˜˜˜˜˜˜˜˜˜              ^
R_C_interface.cpp:180:40: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        arma::mat Gamma_fixed(G_f.begin(), n, n, false);        // reuses memory and avoids extra copy
                  ˜˜˜˜˜˜˜˜˜˜˜                 ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Date *, vector<Date, allocator<Date> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DateVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Datetime *, vector<Datetime, allocator<Datetime> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DatetimeVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:116:16: warning: implicit conversion changes signedness: 'typename iterator_traits<const double *>::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:166:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl__nocast<const double *, double>' requested here
        return primitive_range_wrap__impl__nocast<InputIterator,T>( first, last, typename std::iterator_traits<InputIterator>::iterator_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<const double *, double>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<const double *, double>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<const double *, double>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:903:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<const double *>' requested here
        return internal::range_wrap( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:31:26: note: in instantiation of function template specialization 'Rcpp::wrap<const double *>' requested here
            ::Rcpp::RObject x = ::Rcpp::wrap( object.memptr() , object.memptr() + object.n_elem ) ;
                                ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:45:9: note: in instantiation of function template specialization 'Rcpp::RcppArmadillo::arma_wrap<arma::Col<double> >' requested here
        return RcppArmadillo::arma_wrap( data, Dimension( data.n_elem, 1) ) ;
               ^
R_C_interface.cpp:164:9: note: in instantiation of function template specialization 'Rcpp::wrap<double>' requested here
        return Rcpp::wrap(PostMeans);
               ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:118:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from R_C_interface.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:130:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        switch (size - i){                          
                     ˜ ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:121:26: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
        int __trip_count = size >> 2 ;
            ˜˜˜˜˜˜˜˜˜˜˜˜   ˜˜˜˜˜^˜˜˜
65 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include"   -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c ReadMCMCFiles.cpp -o ReadMCMCFiles.o
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:130:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        switch (size - i){                          
                     ˜ ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:190:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:209:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:237:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:245:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:266:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:274:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:311:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:312:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:319:22: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_VECTOR_ELT( x, i, element ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:320:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ; 
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:343:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:344:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:484:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( LGLSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:443:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2967:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2968:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:448:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2228:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2229:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:458:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpMat_iterators_meat.hpp:393:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:462:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpSubview_iterators_meat.hpp:581:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:50:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:173:76: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        unary_call( Language call_, int index ) : call(call_), proxy(call_,index){}
                                                               ˜˜˜˜˜       ^˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:91: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                             ˜˜˜˜˜˜       ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:113: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                                                   ˜˜˜˜˜˜       ^˜˜˜˜˜
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:60:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Datetime.h:40:40: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
                int getMicroSeconds() const { return m_us; }
                                              ˜˜˜˜˜˜ ^˜˜˜
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:27:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:197:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:212:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:221:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:95:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:110:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:119:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/functions.h:37:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:49:24: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32]
        return sugar::SeqLen( n ) ;
               ˜˜˜˜˜          ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
ReadMCMCFiles.cpp:59:34: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
   uvec             numParents_k(genes);
                    ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
ReadMCMCFiles.cpp:66:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
   numParents.zeros(genes, genes + 1);
   ˜˜˜˜˜˜˜˜˜˜       ^˜˜˜˜
ReadMCMCFiles.cpp:66:34: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
   numParents.zeros(genes, genes + 1);
   ˜˜˜˜˜˜˜˜˜˜              ˜˜˜˜˜˜^˜˜
ReadMCMCFiles.cpp:104:20: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    meanPost.zeros(numElem);
    ˜˜˜˜˜˜˜˜       ^˜˜˜˜˜˜
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Date *, vector<Date, allocator<Date> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DateVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Datetime *, vector<Datetime, allocator<Datetime> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DatetimeVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from ReadMCMCFiles.cpp:6:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
43 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include"   -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c commonFunctions.cc -o commonFunctions.o
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:130:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        switch (size - i){                          
                     ˜ ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:190:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:209:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:237:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:245:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:266:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:274:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:311:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:312:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:319:22: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_VECTOR_ELT( x, i, element ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:320:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ; 
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:343:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:344:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:484:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( LGLSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:443:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2967:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2968:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:448:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2228:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2229:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:458:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpMat_iterators_meat.hpp:393:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:462:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpSubview_iterators_meat.hpp:581:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:50:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:173:76: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        unary_call( Language call_, int index ) : call(call_), proxy(call_,index){}
                                                               ˜˜˜˜˜       ^˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:91: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                             ˜˜˜˜˜˜       ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:113: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                                                   ˜˜˜˜˜˜       ^˜˜˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:60:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Datetime.h:40:40: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
                int getMicroSeconds() const { return m_us; }
                                              ˜˜˜˜˜˜ ^˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:27:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:197:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:212:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:221:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:95:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:110:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:119:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/functions.h:37:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:49:24: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32]
        return sugar::SeqLen( n ) ;
               ˜˜˜˜˜          ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
commonFunctions.cc:135:28: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'blas_int' (aka 'int') [-Wsign-conversion]
  blas_int           m = R.n_rows;
                     ˜   ˜˜^˜˜˜˜˜
commonFunctions.cc:160:31: warning: implicit conversion turns floating-point number into integer: 'double' to 'unsigned int' [-Wconversion]
    array_rand[random_loop] = Rf_rbinom(1, ro);
                            ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
commonFunctions.cc:272:9: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    seq[i] = i;
    ˜˜˜ ^
commonFunctions.cc:272:14: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seq[i] = i;
           ˜ ^
commonFunctions.cc:274:27: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  for (int i = seq.n_elem - 1; i!=0; --i)
           ˜   ˜˜˜˜˜˜˜˜˜˜˜^˜˜
commonFunctions.cc:276:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
    r_int = floor(Rf_runif(0, i+1));
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
commonFunctions.cc:277:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    old_val  = seq[r_int];
             ˜ ^˜˜˜˜˜˜˜˜˜
commonFunctions.cc:277:20: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    old_val  = seq[r_int];
               ˜˜˜ ^˜˜˜˜
commonFunctions.cc:278:9: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    seq[r_int] = seq[i]; 
    ˜˜˜ ^˜˜˜˜
commonFunctions.cc:278:22: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    seq[r_int] = seq[i]; 
                 ˜˜˜ ^
commonFunctions.cc:279:9: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    seq[i]     = old_val;
    ˜˜˜ ^
commonFunctions.cc:279:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    seq[i]     = old_val;
               ˜ ^˜˜˜˜˜˜
commonFunctions.cc:351:17: warning: implicit conversion changes signedness: 'typename enable_if2<is_arma_type<Mat<unsigned int> >::value, typename Mat<unsigned int>::elem_type>::result' (aka 'unsigned int') to 'int' [-Wsign-conversion]
  free_gammas = accu(UpdateMe);
              ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
commonFunctions.cc:366:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'unsigned int' [-Wconversion]
        *iter_gamma_var = *gamma_fixed_iter;
                        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
commonFunctions.cc:382:17: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      if(regMat(i,j))
         ˜˜˜˜˜˜ ^
commonFunctions.cc:382:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      if(regMat(i,j))
         ˜˜˜˜˜˜   ^
commonFunctions.cc:384:14: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        regIndx_Mat(indx_RegIndxMat,i) = j;
        ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
commonFunctions.cc:384:30: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        regIndx_Mat(indx_RegIndxMat,i) = j;
        ˜˜˜˜˜˜˜˜˜˜˜                 ^
commonFunctions.cc:384:35: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
        regIndx_Mat(indx_RegIndxMat,i) = j;
                                       ˜ ^
commonFunctions.cc:428:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
   regsVec.set_size(numRegs(i)*M);
                              ˜^
commonFunctions.cc:429:41: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
   for(unsigned int loop_j = 0; loop_j< M*numRegs(i); loop_j++)
                                        ^˜
commonFunctions.cc:440:59: warning: unused variable 'num_on' [-Wunused-variable]
  unsigned int                                            num_on;
                                                          ^
commonFunctions.cc:482:59: warning: unused variable 'num_on' [-Wunused-variable]
  unsigned int                                            num_on;
                                                          ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Date *, vector<Date, allocator<Date> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DateVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Datetime *, vector<Datetime, allocator<Datetime> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DatetimeVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:464:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/diskio_meat.hpp:2191:51: warning: implicit conversion loses integer precision: 'unsigned long' to 'uword' (aka 'unsigned int') [-Wshorten-64-to-32]
  podarray<char> raw_header(ARMA_MAT_TXT.length() + 1);
                 ˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/diskio_meat.hpp:2170:17: note: in instantiation of function template specialization 'arma::diskio::load_auto_detect<double>' requested here
    load_okay = diskio::load_auto_detect(x, f, err_msg);
                ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:5502:19: note: in instantiation of function template specialization 'arma::diskio::load_auto_detect<double>' requested here
      load_okay = diskio::load_auto_detect(*this, name, err_msg);
                  ^
commonFunctions.cc:69:11: note: in instantiation of member function 'arma::Mat<double>::load' requested here
  dataMat.load(filename);
          ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:464:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/diskio_meat.hpp:2196:14: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'uword' (aka 'unsigned int') [-Wshorten-64-to-32]
  raw_header[ARMA_MAT_TXT.length()] = '\0';
  ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:439:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/auxlib_meat.hpp:1663:22: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'blas_int' (aka 'int') [-Wsign-conversion]
    blas_int  n    = out_n_rows;
              ˜      ^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/op_chol_meat.hpp:21:23: note: in instantiation of function template specialization 'arma::auxlib::chol<double, arma::Mat<double> >' requested here
  const bool status = auxlib::chol(out, X.m);
                      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3548:12: note: in instantiation of function template specialization 'arma::op_chol::apply<arma::Mat<double> >' requested here
  op_type::apply(*this, X);
           ^
commonFunctions.cc:121:13: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::op_chol>' requested here
  R         = chol(Sigma);
            ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:506:9: note: in instantiation of member function 'arma::gemv<true, false, false>::apply' requested here
        gemv<true,         false, false>::apply(out.memptr(), B, A.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:470:7: note: in instantiation of member function 'arma::quasi_unwrap<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times> >::quasi_unwrap' requested here
    : U(A.m)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:556:7: note: in instantiation of member function 'arma::Proxy_xtrans_vector<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy_xtrans_vector' requested here
    : Proxy_xtrans(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_plus.hpp:118:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans>, arma::eglue_plus>::eGlue' requested here
  return eGlue<T1, T2, eglue_plus>(X, Y);
         ^
commonFunctions.cc:261:15: note: in instantiation of function template specialization 'arma::operator+<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >' requested here
  output = Mu + trans(unit_gaussians * chol_sigma) ;
              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:511:9: note: in instantiation of member function 'arma::gemv<false, false, false>::apply' requested here
        gemv<false,        false, false>::apply(out.memptr(), A, B.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:470:7: note: in instantiation of member function 'arma::quasi_unwrap<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times> >::quasi_unwrap' requested here
    : U(A.m)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:556:7: note: in instantiation of member function 'arma::Proxy_xtrans_vector<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy_xtrans_vector' requested here
    : Proxy_xtrans(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_plus.hpp:118:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans>, arma::eglue_plus>::eGlue' requested here
  return eGlue<T1, T2, eglue_plus>(X, Y);
         ^
commonFunctions.cc:261:15: note: in instantiation of function template specialization 'arma::operator+<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >' requested here
  output = Mu + trans(unit_gaussians * chol_sigma) ;
              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:515:9: note: in instantiation of member function 'arma::gemm<false, false, false, false>::apply' requested here
        gemm<false, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:470:7: note: in instantiation of member function 'arma::quasi_unwrap<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times> >::quasi_unwrap' requested here
    : U(A.m)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:556:7: note: in instantiation of member function 'arma::Proxy_xtrans_vector<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy_xtrans_vector' requested here
    : Proxy_xtrans(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_plus.hpp:118:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans>, arma::eglue_plus>::eGlue' requested here
  return eGlue<T1, T2, eglue_plus>(X, Y);
         ^
commonFunctions.cc:261:15: note: in instantiation of function template specialization 'arma::operator+<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >' requested here
  output = Mu + trans(unit_gaussians * chol_sigma) ;
              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:523:9: note: in instantiation of member function 'arma::gemv<true, true, false>::apply' requested here
        gemv<true,         true, false>::apply(out.memptr(), B, A.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:470:7: note: in instantiation of member function 'arma::quasi_unwrap<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times> >::quasi_unwrap' requested here
    : U(A.m)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:556:7: note: in instantiation of member function 'arma::Proxy_xtrans_vector<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy_xtrans_vector' requested here
    : Proxy_xtrans(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_plus.hpp:118:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans>, arma::eglue_plus>::eGlue' requested here
  return eGlue<T1, T2, eglue_plus>(X, Y);
         ^
commonFunctions.cc:261:15: note: in instantiation of function template specialization 'arma::operator+<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >' requested here
  output = Mu + trans(unit_gaussians * chol_sigma) ;
              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:528:9: note: in instantiation of member function 'arma::gemv<false, true, false>::apply' requested here
        gemv<false,        true, false>::apply(out.memptr(), A, B.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:470:7: note: in instantiation of member function 'arma::quasi_unwrap<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times> >::quasi_unwrap' requested here
    : U(A.m)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:556:7: note: in instantiation of member function 'arma::Proxy_xtrans_vector<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy_xtrans_vector' requested here
    : Proxy_xtrans(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_plus.hpp:118:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans>, arma::eglue_plus>::eGlue' requested here
  return eGlue<T1, T2, eglue_plus>(X, Y);
         ^
commonFunctions.cc:261:15: note: in instantiation of function template specialization 'arma::operator+<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >' requested here
  output = Mu + trans(unit_gaussians * chol_sigma) ;
              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:532:9: note: in instantiation of member function 'arma::gemm<false, false, true, false>::apply' requested here
        gemm<false, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:470:7: note: in instantiation of member function 'arma::quasi_unwrap<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times> >::quasi_unwrap' requested here
    : U(A.m)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:556:7: note: in instantiation of member function 'arma::Proxy_xtrans_vector<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy_xtrans_vector' requested here
    : Proxy_xtrans(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_plus.hpp:118:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans>, arma::eglue_plus>::eGlue' requested here
  return eGlue<T1, T2, eglue_plus>(X, Y);
         ^
commonFunctions.cc:261:15: note: in instantiation of function template specialization 'arma::operator+<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >' requested here
  output = Mu + trans(unit_gaussians * chol_sigma) ;
              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:549:9: note: in instantiation of member function 'arma::gemm<true, false, false, false>::apply' requested here
        gemm<true, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:470:7: note: in instantiation of member function 'arma::quasi_unwrap<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times> >::quasi_unwrap' requested here
    : U(A.m)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:556:7: note: in instantiation of member function 'arma::Proxy_xtrans_vector<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy_xtrans_vector' requested here
    : Proxy_xtrans(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_plus.hpp:118:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans>, arma::eglue_plus>::eGlue' requested here
  return eGlue<T1, T2, eglue_plus>(X, Y);
         ^
commonFunctions.cc:261:15: note: in instantiation of function template specialization 'arma::operator+<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >' requested here
  output = Mu + trans(unit_gaussians * chol_sigma) ;
              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:566:9: note: in instantiation of member function 'arma::gemm<true, false, true, false>::apply' requested here
        gemm<true, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:470:7: note: in instantiation of member function 'arma::quasi_unwrap<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times> >::quasi_unwrap' requested here
    : U(A.m)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:556:7: note: in instantiation of member function 'arma::Proxy_xtrans_vector<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy_xtrans_vector' requested here
    : Proxy_xtrans(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_plus.hpp:118:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans>, arma::eglue_plus>::eGlue' requested here
  return eGlue<T1, T2, eglue_plus>(X, Y);
         ^
commonFunctions.cc:261:15: note: in instantiation of function template specialization 'arma::operator+<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >' requested here
  output = Mu + trans(unit_gaussians * chol_sigma) ;
              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:583:9: note: in instantiation of member function 'arma::gemm<false, true, false, false>::apply' requested here
        gemm<false, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:470:7: note: in instantiation of member function 'arma::quasi_unwrap<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times> >::quasi_unwrap' requested here
    : U(A.m)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:556:7: note: in instantiation of member function 'arma::Proxy_xtrans_vector<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy_xtrans_vector' requested here
    : Proxy_xtrans(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_plus.hpp:118:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans>, arma::eglue_plus>::eGlue' requested here
  return eGlue<T1, T2, eglue_plus>(X, Y);
         ^
commonFunctions.cc:261:15: note: in instantiation of function template specialization 'arma::operator+<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >' requested here
  output = Mu + trans(unit_gaussians * chol_sigma) ;
              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:600:9: note: in instantiation of member function 'arma::gemm<false, true, true, false>::apply' requested here
        gemm<false, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:470:7: note: in instantiation of member function 'arma::quasi_unwrap<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times> >::quasi_unwrap' requested here
    : U(A.m)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:556:7: note: in instantiation of member function 'arma::Proxy_xtrans_vector<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy_xtrans_vector' requested here
    : Proxy_xtrans(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_plus.hpp:118:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans>, arma::eglue_plus>::eGlue' requested here
  return eGlue<T1, T2, eglue_plus>(X, Y);
         ^
commonFunctions.cc:261:15: note: in instantiation of function template specialization 'arma::operator+<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >' requested here
  output = Mu + trans(unit_gaussians * chol_sigma) ;
              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:617:9: note: in instantiation of member function 'arma::gemm<true, true, false, false>::apply' requested here
        gemm<true, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:470:7: note: in instantiation of member function 'arma::quasi_unwrap<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times> >::quasi_unwrap' requested here
    : U(A.m)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:556:7: note: in instantiation of member function 'arma::Proxy_xtrans_vector<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy_xtrans_vector' requested here
    : Proxy_xtrans(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_plus.hpp:118:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans>, arma::eglue_plus>::eGlue' requested here
  return eGlue<T1, T2, eglue_plus>(X, Y);
         ^
commonFunctions.cc:261:15: note: in instantiation of function template specialization 'arma::operator+<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >' requested here
  output = Mu + trans(unit_gaussians * chol_sigma) ;
              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:634:9: note: in instantiation of member function 'arma::gemm<true, true, true, false>::apply' requested here
        gemm<true, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Row<double>, arma::Mat<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:470:7: note: in instantiation of member function 'arma::quasi_unwrap<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times> >::quasi_unwrap' requested here
    : U(A.m)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:556:7: note: in instantiation of member function 'arma::Proxy_xtrans_vector<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy_xtrans_vector' requested here
    : Proxy_xtrans(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_plus.hpp:118:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans>, arma::eglue_plus>::eGlue' requested here
  return eGlue<T1, T2, eglue_plus>(X, Y);
         ^
commonFunctions.cc:261:15: note: in instantiation of function template specialization 'arma::operator+<arma::Col<double>, arma::Op<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::op_htrans> >' requested here
  output = Mu + trans(unit_gaussians * chol_sigma) ;
              ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:294:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eop_aux.hpp:141:16: warning: implicit conversion turns floating-point number into integer: 'float' to 'unsigned int' [-Wconversion]
    out1 = tmp1*k;
         ˜ ˜˜˜˜^˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eop_aux.hpp:156:26: note: in instantiation of member function 'arma::eop_aux_randn<unsigned int>::generate' requested here
      eop_aux_randn<eT>::generate( mem[i], mem[j] );
                         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:5167:22: note: in instantiation of member function 'arma::eop_aux_randn<unsigned int>::fill' requested here
  eop_aux_randn<eT>::fill( memptr(), n_elem );
                     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Gen_meat.hpp:102:71: note: in instantiation of member function 'arma::Mat<unsigned int>::randn' requested here
  else if(is_same_type<gen_type, gen_randn    >::value == true) { out.randn(); }
                                                                      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3407:5: note: in instantiation of member function 'arma::Gen<arma::Mat<unsigned int>, arma::gen_zeros>::apply' requested here
  X.apply(*this);
    ^
commonFunctions.cc:395:21: note: in instantiation of function template specialization 'arma::Mat<unsigned int>::Mat<arma::Mat<unsigned int>, arma::gen_zeros>' requested here
  umat isNAN_vals = zeros<umat>(A.n_rows, A.n_cols);
                    ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:294:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eop_aux.hpp:142:16: warning: implicit conversion turns floating-point number into integer: 'float' to 'unsigned int' [-Wconversion]
    out2 = tmp2*k;
         ˜ ˜˜˜˜^˜
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:439:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/auxlib_meat.hpp:374:30: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'blas_int' (aka 'int') [-Wsign-conversion]
    blas_int n_rows    = out.n_rows;
             ˜˜˜˜˜˜      ˜˜˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/auxlib_meat.hpp:71:14: note: in instantiation of function template specialization 'arma::auxlib::inv_inplace_lapack<double>' requested here
    status = auxlib::inv_inplace_lapack(out);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/op_inv_meat.hpp:54:39: note: in instantiation of function template specialization 'arma::auxlib::inv<double>' requested here
    const bool status = (mode == 0) ? auxlib::inv(out, X.m) : auxlib::inv(out, X.m, true);
                                      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3548:12: note: in instantiation of function template specialization 'arma::op_inv::apply<arma::Mat<double> >' requested here
  op_type::apply(*this, X);
           ^
commonFunctions.cc:461:25: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::op_inv>' requested here
      covarianceMatrixB = inv(lambxCPlusSReduced);
                        ^
In file included from commonFunctions.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:439:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/auxlib_meat.hpp:375:30: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'blas_int' (aka 'int') [-Wsign-conversion]
    blas_int n_cols    = out.n_cols;
             ˜˜˜˜˜˜      ˜˜˜˜^˜˜˜˜˜
109 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include"   -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c functionsErrorModel.cc -o functionsErrorModel.o
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:130:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        switch (size - i){                          
                     ˜ ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:190:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:209:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:237:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:245:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:266:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:274:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:311:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:312:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:319:22: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_VECTOR_ELT( x, i, element ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:320:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ; 
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:343:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:344:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:484:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( LGLSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:443:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2967:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2968:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:448:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2228:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2229:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:458:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpMat_iterators_meat.hpp:393:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:462:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpSubview_iterators_meat.hpp:581:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:50:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:173:76: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        unary_call( Language call_, int index ) : call(call_), proxy(call_,index){}
                                                               ˜˜˜˜˜       ^˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:91: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                             ˜˜˜˜˜˜       ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:113: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                                                   ˜˜˜˜˜˜       ^˜˜˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:60:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Datetime.h:40:40: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
                int getMicroSeconds() const { return m_us; }
                                              ˜˜˜˜˜˜ ^˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:27:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:197:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:212:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:221:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:95:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:110:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:119:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/functions.h:37:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:49:24: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32]
        return sugar::SeqLen( n ) ;
               ˜˜˜˜˜          ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
functionsErrorModel.cc:49:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   samples        = ParamVec_C(0);
                  ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:50:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   burnIn         = ParamVec_C(1);
                  ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:51:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   thin           = ParamVec_C(2);
                  ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:60:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   thinDataSample = ParamVec_C(11);   
                  ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:61:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   numExp         = ParamVec_C(12);      
                  ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:92:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   samples        = ParamVec_C(0);
                  ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:93:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   burnIn         = ParamVec_C(1);
                  ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:94:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   thin           = ParamVec_C(2);
                  ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:105:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   thinDataSample = ParamVec_C(13);   
                  ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:106:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   numExp         = ParamVec_C(14);      
                  ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:122:14: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  B.set_size(genes, genes);
  ˜          ^˜˜˜˜
functionsErrorModel.cc:122:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  B.set_size(genes, genes);
  ˜                 ^˜˜˜˜
functionsErrorModel.cc:123:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  gamma_ij.set_size(genes, genes);
  ˜˜˜˜˜˜˜˜          ^˜˜˜˜
functionsErrorModel.cc:123:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  gamma_ij.set_size(genes, genes);
  ˜˜˜˜˜˜˜˜                 ^˜˜˜˜
functionsErrorModel.cc:124:16: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  eta.set_size(genes);
  ˜˜˜          ^˜˜˜˜
functionsErrorModel.cc:125:15: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  mu.set_size(genes);
  ˜˜          ^˜˜˜˜
functionsErrorModel.cc:126:23: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  lambda_Exp.set_size(genes);
  ˜˜˜˜˜˜˜˜˜˜          ^˜˜˜˜
functionsErrorModel.cc:127:23: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  degFreedom.set_size(genes);
  ˜˜˜˜˜˜˜˜˜˜          ^˜˜˜˜
functionsErrorModel.cc:151:24: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
  genes      = dataMat.n_rows;
             ˜ ˜˜˜˜˜˜˜˜^˜˜˜˜˜
functionsErrorModel.cc:152:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  total_time = dataMat.n_cols/numDataSets;
                             ˜^˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:153:43: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  time_m     = dataMat.n_cols/numDataSets -1;
             ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
functionsErrorModel.cc:153:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  time_m     = dataMat.n_cols/numDataSets -1;
                             ˜^˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:155:36: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  allData = cube(dataMat.memptr(), genes, dataMat.n_cols/numDataSets, numDataSets); 
            ˜˜˜˜                   ^˜˜˜˜
functionsErrorModel.cc:155:58: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  allData = cube(dataMat.memptr(), genes, dataMat.n_cols/numDataSets, numDataSets); 
                                                        ˜^˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:155:71: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  allData = cube(dataMat.memptr(), genes, dataMat.n_cols/numDataSets, numDataSets); 
            ˜˜˜˜                                                      ^˜˜˜˜˜˜˜˜˜˜
functionsErrorModel.cc:156:35: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  N_it    = numDataSets*ones<mat>(genes, total_time);
                        ˜˜˜˜      ^˜˜˜˜
functionsErrorModel.cc:160:44: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    N_it = N_it - is_NaN_mat(allData.slice(Dataset_i)); // .is_finite();
                             ˜˜˜˜˜˜˜       ^˜˜˜˜˜˜˜˜
functionsErrorModel.cc:221:55: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    inv_covMat.diag() = diag_B_eta_B + eta + N_it.col(t)%lambda_Exp;
                                             ˜˜˜˜     ^
functionsErrorModel.cc:224:38: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    aux_mu_Y   = trans(trans((Y.col(t+1) - mu)%eta) * B) + (mu + B*Y.col(t-1))%eta + Xhat.col(t)%lambda_Exp;
                              ˜     ˜^˜
functionsErrorModel.cc:224:75: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    aux_mu_Y   = trans(trans((Y.col(t+1) - mu)%eta) * B) + (mu + B*Y.col(t-1))%eta + Xhat.col(t)%lambda_Exp;
                                                                   ˜     ˜^˜
functionsErrorModel.cc:224:95: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    aux_mu_Y   = trans(trans((Y.col(t+1) - mu)%eta) * B) + (mu + B*Y.col(t-1))%eta + Xhat.col(t)%lambda_Exp;
                                                                                     ˜˜˜˜     ^
functionsErrorModel.cc:229:11: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    Y.col(t)   = mvnrnd(mu_Y, covMatY);
    ˜     ^
functionsErrorModel.cc:234:39: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  inv_covMat = diagmat(eta + N_it.col(t)%lambda_Exp);
                             ˜˜˜˜     ^
functionsErrorModel.cc:236:31: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  aux_mu_Y   = (mu + B*Y.col(t-1))%eta + Xhat.col(t)%lambda_Exp;
                       ˜     ˜^˜
functionsErrorModel.cc:236:51: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  aux_mu_Y   = (mu + B*Y.col(t-1))%eta + Xhat.col(t)%lambda_Exp;
                                         ˜˜˜˜     ^
functionsErrorModel.cc:241:9: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Y.col(time_m) = mvnrnd(mu_Y, covMatY);
  ˜     ^˜˜˜˜˜
functionsErrorModel.cc:243:30: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Yt      = Y.cols(0, time_m -1);
            ˜         ˜˜˜˜˜˜˜^˜
functionsErrorModel.cc:244:23: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Ytplus1 = Y.cols(1, time_m);
            ˜         ^˜˜˜˜˜
functionsErrorModel.cc:279:37: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  cube cube_out(A.n_rows, A.n_cols, slices);
       ˜˜˜˜˜˜˜˜                     ^˜˜˜˜˜
functionsErrorModel.cc:282:20: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    cube_out.slice(Dataset_i) = A;
    ˜˜˜˜˜˜˜˜       ^˜˜˜˜˜˜˜˜
functionsErrorModel.cc:316:69: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  colvec                                       b_RW_inv, newDegVals(genes), b_RW_inv_prime;
                                                         ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
functionsErrorModel.cc:318:37: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  colvec           logRatioProposal(genes), logGammaDeg_new(genes), logGammaDeg_old(genes);
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
functionsErrorModel.cc:318:61: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  colvec           logRatioProposal(genes), logGammaDeg_new(genes), logGammaDeg_old(genes);
                                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
functionsErrorModel.cc:318:85: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  colvec           logRatioProposal(genes), logGammaDeg_new(genes), logGammaDeg_old(genes);
                                                                    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
functionsErrorModel.cc:320:85: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  colvec                                                               randUnif_vec(genes);
                                                                       ˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
functionsErrorModel.cc:338:22: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    logRatioProposal[loop_var] = Rf_dgamma(degFreedom[loop_var], a_RW, b_RW_inv_prime[loop_var], 1) - Rf_dgamma(newDegVals[loop_var], a_RW, b_RW_inv[loop_var], 1);
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
functionsErrorModel.cc:338:55: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    logRatioProposal[loop_var] = Rf_dgamma(degFreedom[loop_var], a_RW, b_RW_inv_prime[loop_var], 1) - Rf_dgamma(newDegVals[loop_var], a_RW, b_RW_inv[loop_var], 1);
                                           ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
functionsErrorModel.cc:338:87: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    logRatioProposal[loop_var] = Rf_dgamma(degFreedom[loop_var], a_RW, b_RW_inv_prime[loop_var], 1) - Rf_dgamma(newDegVals[loop_var], a_RW, b_RW_inv[loop_var], 1);
                                                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
functionsErrorModel.cc:338:124: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    logRatioProposal[loop_var] = Rf_dgamma(degFreedom[loop_var], a_RW, b_RW_inv_prime[loop_var], 1) - Rf_dgamma(newDegVals[loop_var], a_RW, b_RW_inv[loop_var], 1);
                                                                                                                ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
functionsErrorModel.cc:338:150: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    logRatioProposal[loop_var] = Rf_dgamma(degFreedom[loop_var], a_RW, b_RW_inv_prime[loop_var], 1) - Rf_dgamma(newDegVals[loop_var], a_RW, b_RW_inv[loop_var], 1);
                                                                                                                                            ˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
functionsErrorModel.cc:359:47: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  alpha_mat         = join_rows(zeros<colvec>(genes), logHastings_Ratio);
                                ˜˜˜˜˜         ^˜˜˜˜
functionsErrorModel.cc:379:73: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  half_degs_rep       = repMat_cube(mat(repmat(degFreedom/2., 1, time_m + 1)), reps);
                                        ˜˜˜˜˜˜                   ˜˜˜˜˜˜˜^˜˜
functionsErrorModel.cc:380:73: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  half_lambda_exp_rep = repMat_cube(mat(repmat(lambda_exp/2., 1, time_m + 1)), reps);
                                        ˜˜˜˜˜˜                   ˜˜˜˜˜˜˜^˜˜
functionsErrorModel.cc:422:61: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    inv_covMat.diag() = diag_B_eta_B + eta + sumWeights.col(t)%lambda_Exp;
                                             ˜˜˜˜˜˜˜˜˜˜     ^
functionsErrorModel.cc:426:38: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    aux_mu_Y   = trans(trans((Y.col(t+1) - mu)%eta) * B) + (mu + B*Y.col(t-1))%eta + weightedSum.col(t)%lambda_Exp;
                              ˜     ˜^˜
functionsErrorModel.cc:426:75: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    aux_mu_Y   = trans(trans((Y.col(t+1) - mu)%eta) * B) + (mu + B*Y.col(t-1))%eta + weightedSum.col(t)%lambda_Exp;
                                                                   ˜     ˜^˜
functionsErrorModel.cc:426:102: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    aux_mu_Y   = trans(trans((Y.col(t+1) - mu)%eta) * B) + (mu + B*Y.col(t-1))%eta + weightedSum.col(t)%lambda_Exp;
                                                                                     ˜˜˜˜˜˜˜˜˜˜˜     ^
functionsErrorModel.cc:431:11: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    Y.col(t)   = mvnrnd(mu_Y, covMatY);
    ˜     ^
functionsErrorModel.cc:436:45: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  inv_covMat = diagmat(eta + sumWeights.col(t)%lambda_Exp);
                             ˜˜˜˜˜˜˜˜˜˜     ^
functionsErrorModel.cc:438:31: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  aux_mu_Y   = (mu + B*Y.col(t-1))%eta + weightedSum.col(t)%lambda_Exp;
                       ˜     ˜^˜
functionsErrorModel.cc:438:58: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  aux_mu_Y   = (mu + B*Y.col(t-1))%eta + weightedSum.col(t)%lambda_Exp;
                                         ˜˜˜˜˜˜˜˜˜˜˜     ^
functionsErrorModel.cc:443:9: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Y.col(time_m) = mvnrnd(mu_Y, covMatY);
  ˜     ^˜˜˜˜˜
functionsErrorModel.cc:445:30: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Yt      = Y.cols(0, time_m -1);
            ˜         ˜˜˜˜˜˜˜^˜
functionsErrorModel.cc:446:23: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  Ytplus1 = Y.cols(1, time_m);
            ˜         ^˜˜˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Date *, vector<Date, allocator<Date> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DateVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Datetime *, vector<Datetime, allocator<Datetime> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DatetimeVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:506:9: note: in instantiation of member function 'arma::gemv<true, false, false>::apply' requested here
        gemv<true,         false, false>::apply(out.memptr(), B, A.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
functionsErrorModel.cc:184:9: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C     = Yt * trans(Yt);
        ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:511:9: note: in instantiation of member function 'arma::gemv<false, false, false>::apply' requested here
        gemv<false,        false, false>::apply(out.memptr(), A, B.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
functionsErrorModel.cc:184:9: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C     = Yt * trans(Yt);
        ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:515:9: note: in instantiation of member function 'arma::gemm<false, false, false, false>::apply' requested here
        gemm<false, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
functionsErrorModel.cc:184:9: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C     = Yt * trans(Yt);
        ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:523:9: note: in instantiation of member function 'arma::gemv<true, true, false>::apply' requested here
        gemv<true,         true, false>::apply(out.memptr(), B, A.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
functionsErrorModel.cc:184:9: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C     = Yt * trans(Yt);
        ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:528:9: note: in instantiation of member function 'arma::gemv<false, true, false>::apply' requested here
        gemv<false,        true, false>::apply(out.memptr(), A, B.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
functionsErrorModel.cc:184:9: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C     = Yt * trans(Yt);
        ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:532:9: note: in instantiation of member function 'arma::gemm<false, false, true, false>::apply' requested here
        gemm<false, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
functionsErrorModel.cc:184:9: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C     = Yt * trans(Yt);
        ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:549:9: note: in instantiation of member function 'arma::gemm<true, false, false, false>::apply' requested here
        gemm<true, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
functionsErrorModel.cc:184:9: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C     = Yt * trans(Yt);
        ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:566:9: note: in instantiation of member function 'arma::gemm<true, false, true, false>::apply' requested here
        gemm<true, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
functionsErrorModel.cc:184:9: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C     = Yt * trans(Yt);
        ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:583:9: note: in instantiation of member function 'arma::gemm<false, true, false, false>::apply' requested here
        gemm<false, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
functionsErrorModel.cc:184:9: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C     = Yt * trans(Yt);
        ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:600:9: note: in instantiation of member function 'arma::gemm<false, true, true, false>::apply' requested here
        gemm<false, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
functionsErrorModel.cc:184:9: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C     = Yt * trans(Yt);
        ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:617:9: note: in instantiation of member function 'arma::gemm<true, true, false, false>::apply' requested here
        gemm<true, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
functionsErrorModel.cc:184:9: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C     = Yt * trans(Yt);
        ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:634:9: note: in instantiation of member function 'arma::gemm<true, true, true, false>::apply' requested here
        gemm<true, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, true, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3935:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
functionsErrorModel.cc:184:9: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::Op<arma::Mat<double>, arma::op_htrans>, arma::glue_times>' requested here
  C     = Yt * trans(Yt);
        ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:439:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/auxlib_meat.hpp:374:30: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'blas_int' (aka 'int') [-Wsign-conversion]
    blas_int n_rows    = out.n_rows;
             ˜˜˜˜˜˜      ˜˜˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/auxlib_meat.hpp:71:14: note: in instantiation of function template specialization 'arma::auxlib::inv_inplace_lapack<double>' requested here
    status = auxlib::inv_inplace_lapack(out);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/op_inv_meat.hpp:54:39: note: in instantiation of function template specialization 'arma::auxlib::inv<double>' requested here
    const bool status = (mode == 0) ? auxlib::inv(out, X.m) : auxlib::inv(out, X.m, true);
                                      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3548:12: note: in instantiation of function template specialization 'arma::op_inv::apply<arma::Mat<double> >' requested here
  op_type::apply(*this, X);
           ^
functionsErrorModel.cc:209:14: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::op_inv>' requested here
  covMatY    = inv(inv_covMat);
             ^
In file included from functionsErrorModel.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:439:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/auxlib_meat.hpp:375:30: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'blas_int' (aka 'int') [-Wsign-conversion]
    blas_int n_cols    = out.n_cols;
             ˜˜˜˜˜˜      ˜˜˜˜^˜˜˜˜˜
145 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include"   -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c matrixManipulationFunctions.cc -o matrixManipulationFunctions.o
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:130:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        switch (size - i){                          
                     ˜ ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:190:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:209:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:237:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:245:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:266:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:274:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:311:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:312:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:319:22: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_VECTOR_ELT( x, i, element ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:320:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ; 
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:343:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:344:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:484:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( LGLSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:443:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2967:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2968:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:448:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2228:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2229:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:458:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpMat_iterators_meat.hpp:393:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:462:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpSubview_iterators_meat.hpp:581:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:50:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:173:76: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        unary_call( Language call_, int index ) : call(call_), proxy(call_,index){}
                                                               ˜˜˜˜˜       ^˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:91: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                             ˜˜˜˜˜˜       ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:113: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                                                   ˜˜˜˜˜˜       ^˜˜˜˜˜
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:60:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Datetime.h:40:40: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
                int getMicroSeconds() const { return m_us; }
                                              ˜˜˜˜˜˜ ^˜˜˜
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:27:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:197:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:212:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:221:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:95:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:110:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:119:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/functions.h:37:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:49:24: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32]
        return sugar::SeqLen( n ) ;
               ˜˜˜˜˜          ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
matrixManipulationFunctions.cc:24:21: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
    indx_row_elem = i + row_elem*col_lengh;
                    ^ ˜
matrixManipulationFunctions.cc:55:21: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
    indx_row_elem = i + indxRegs(row_elem)*col_lengh;
                    ^ ˜
matrixManipulationFunctions.cc:84:21: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
    indx_row_elem = i + row_elem*col_lengh;
                    ^ ˜
matrixManipulationFunctions.cc:113:21: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
    indx_row_elem = i + (*indxVec_iter)*col_lengh;
                    ^ ˜
matrixManipulationFunctions.cc:142:21: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
    indx_row_elem = i + (*indxRegs_iter)*col_lengh;
                    ^ ˜
matrixManipulationFunctions.cc:203:21: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
    indx_row_elem = i + (*indxRegs_iter)*col_lengh;
                    ^ ˜
matrixManipulationFunctions.cc:575:39: warning: implicit conversion changes signedness: 'const int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  rowvec                row_i = X.row(i);
                                ˜     ^
matrixManipulationFunctions.cc:601:45: warning: implicit conversion changes signedness: 'const int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  rowvec                row_i =       X.row(i);
                                      ˜     ^
matrixManipulationFunctions.cc:651:31: warning: implicit conversion turns floating-point number into integer: 'const double' to 'uword' (aka 'unsigned int') [-Wconversion]
    return_mat.col(k) = B.col(*order_iter);
                        ˜     ^˜˜˜˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:663:20: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  out_seq.set_size(final_dim);
  ˜˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:667:13: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    out_seq[loop_var] = (double) seq_elem;
    ˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:677:71: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
  int                                                 num_elems_A = A.n_cols;
                                                      ˜˜˜˜˜˜˜˜˜˜˜   ˜˜^˜˜˜˜˜
matrixManipulationFunctions.cc:678:39: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  mat         BlockDiagMat(num_elems_A*num_repeats, num_elems_A*num_repeats);  
              ˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:678:64: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  mat         BlockDiagMat(num_elems_A*num_repeats, num_elems_A*num_repeats);  
              ˜˜˜˜˜˜˜˜˜˜˜˜                          ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:686:25: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    BlockDiagMat.submat(start_indx, start_indx, end_indx, end_indx) = A; 
    ˜˜˜˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:686:37: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    BlockDiagMat.submat(start_indx, start_indx, end_indx, end_indx) = A; 
    ˜˜˜˜˜˜˜˜˜˜˜˜                    ^˜˜˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:686:49: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    BlockDiagMat.submat(start_indx, start_indx, end_indx, end_indx) = A; 
    ˜˜˜˜˜˜˜˜˜˜˜˜                                ^˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:686:59: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    BlockDiagMat.submat(start_indx, start_indx, end_indx, end_indx) = A; 
    ˜˜˜˜˜˜˜˜˜˜˜˜                                          ^˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:695:65: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
  int                                           num_elems_A = A.n_cols;
                                                ˜˜˜˜˜˜˜˜˜˜˜   ˜˜^˜˜˜˜˜
matrixManipulationFunctions.cc:697:36: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  BlockDiagMat.set_size(num_elems_A*num_repeats, num_elems_A*num_repeats);  
  ˜˜˜˜˜˜˜˜˜˜˜˜          ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:697:61: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  BlockDiagMat.set_size(num_elems_A*num_repeats, num_elems_A*num_repeats);  
  ˜˜˜˜˜˜˜˜˜˜˜˜                                   ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:704:25: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    BlockDiagMat.submat(start_indx, start_indx, end_indx, end_indx) = A; 
    ˜˜˜˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:704:37: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    BlockDiagMat.submat(start_indx, start_indx, end_indx, end_indx) = A; 
    ˜˜˜˜˜˜˜˜˜˜˜˜                    ^˜˜˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:704:49: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    BlockDiagMat.submat(start_indx, start_indx, end_indx, end_indx) = A; 
    ˜˜˜˜˜˜˜˜˜˜˜˜                                ^˜˜˜˜˜˜˜
matrixManipulationFunctions.cc:704:59: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    BlockDiagMat.submat(start_indx, start_indx, end_indx, end_indx) = A; 
    ˜˜˜˜˜˜˜˜˜˜˜˜                                          ^˜˜˜˜˜˜˜
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Date *, vector<Date, allocator<Date> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DateVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Datetime *, vector<Datetime, allocator<Datetime> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DatetimeVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from matrixManipulationFunctions.cc:3:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
64 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include"   -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c updateFunctions_AR1.cc -o updateFunctions_AR1.o
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:130:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        switch (size - i){                          
                     ˜ ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:190:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:209:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:237:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:245:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:266:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:274:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:311:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:312:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:319:22: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_VECTOR_ELT( x, i, element ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:320:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ; 
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:343:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:344:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:484:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( LGLSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:443:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2967:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2968:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:448:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2228:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2229:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:458:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpMat_iterators_meat.hpp:393:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:462:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpSubview_iterators_meat.hpp:581:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:50:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:173:76: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        unary_call( Language call_, int index ) : call(call_), proxy(call_,index){}
                                                               ˜˜˜˜˜       ^˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:91: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                             ˜˜˜˜˜˜       ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:113: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                                                   ˜˜˜˜˜˜       ^˜˜˜˜˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:60:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Datetime.h:40:40: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
                int getMicroSeconds() const { return m_us; }
                                              ˜˜˜˜˜˜ ^˜˜˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:27:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:197:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:212:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:221:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:95:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:110:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:119:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/functions.h:37:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:49:24: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32]
        return sugar::SeqLen( n ) ;
               ˜˜˜˜˜          ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
updateFunctions_AR1.cc:46:14: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   samples = ParamVec_C(0);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
updateFunctions_AR1.cc:47:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   burnIn = ParamVec_C(1);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
updateFunctions_AR1.cc:48:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   thin = ParamVec_C(2);
        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
updateFunctions_AR1.cc:70:14: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  B.set_size(genes, genes);
  ˜          ^˜˜˜˜
updateFunctions_AR1.cc:70:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  B.set_size(genes, genes);
  ˜                 ^˜˜˜˜
updateFunctions_AR1.cc:71:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  gamma_ij.set_size(genes, genes);
  ˜˜˜˜˜˜˜˜          ^˜˜˜˜
updateFunctions_AR1.cc:71:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  gamma_ij.set_size(genes, genes);
  ˜˜˜˜˜˜˜˜                 ^˜˜˜˜
updateFunctions_AR1.cc:72:16: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  eta.set_size(genes);
  ˜˜˜          ^˜˜˜˜
updateFunctions_AR1.cc:73:15: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  mu.set_size(genes);
  ˜˜          ^˜˜˜˜
updateFunctions_AR1.cc:131:6: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        j = seq_rnd[j_loop];
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
updateFunctions_AR1.cc:131:14: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        j = seq_rnd[j_loop];
            ˜˜˜˜˜˜˜ ^˜˜˜˜˜
updateFunctions_AR1.cc:138:35: warning: implicit conversion changes signedness: 'int' to 'const unsigned int' [-Wsign-conversion]
          MHStep(links_on, logMVPDF_Old, j, lambxCPlusS, lambxCplusIdot, logRosMinlogS);
          ˜˜˜˜˜˜                         ^
updateFunctions_AR1.cc:145:28: warning: implicit conversion changes signedness: 'unsigned int' to 'const int' [-Wsign-conversion]
      updateCoefficients(B,i, links_on, lambxCPlusS, lambxCplusIdot);
      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜   ^
updateFunctions_AR1.cc:175:33: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
                                      regsVec,              i,          C,     Cplus,      eta,
                                                            ^
updateFunctions_AR1.cc:189:6: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        j = seq_rnd[j_loop];
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
updateFunctions_AR1.cc:189:14: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        j = seq_rnd[j_loop];
            ˜˜˜˜˜˜˜ ^˜˜˜˜˜
updateFunctions_AR1.cc:191:16: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
        if (updateVec(j))
            ˜˜˜˜˜˜˜˜˜ ^
updateFunctions_AR1.cc:195:35: warning: implicit conversion changes signedness: 'int' to 'const unsigned int' [-Wsign-conversion]
          MHStep(links_on, logMVPDF_Old, j, lambxCPlusS, lambxCplusIdot, logRosMinlogS);
          ˜˜˜˜˜˜                         ^
updateFunctions_AR1.cc:199:48: warning: implicit conversion changes signedness: 'unsigned int' to 'const int' [-Wsign-conversion]
      fillMatRowWithIndx_u(gamma_ij, links_on, i, regsVec);
      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                     ^
updateFunctions_AR1.cc:202:33: warning: implicit conversion changes signedness: 'unsigned int' to 'const int' [-Wsign-conversion]
      updateCoefficients_reg(B, i, links_on, lambxCPlusS, lambxCplusIdot, regsVec);      
      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜    ^
updateFunctions_AR1.cc:264:59: warning: unused variable 'num_on' [-Wunused-variable]
  unsigned int                                            num_on;  
                                                          ^
updateFunctions_AR1.cc:296:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  lambxCPlusS        = eta(i)*lambxCPlusS;
                       ˜˜˜ ^
updateFunctions_AR1.cc:301:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  lambxCplusIdot     = eta(i)*lambxCplusIdot;
                       ˜˜˜ ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Date *, vector<Date, allocator<Date> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DateVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Datetime *, vector<Datetime, allocator<Datetime> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DatetimeVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:506:9: note: in instantiation of member function 'arma::gemv<true, false, false>::apply' requested here
        gemv<true,         false, false>::apply(out.memptr(), B, A.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Col<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
updateFunctions_AR1.cc:91:39: note: in instantiation of function template specialization 'arma::operator-<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >' requested here
    mu_mean   = aux_muVar % (mean_xt1 - B*mean_xt);   
                                      ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:511:9: note: in instantiation of member function 'arma::gemv<false, false, false>::apply' requested here
        gemv<false,        false, false>::apply(out.memptr(), A, B.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Col<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
updateFunctions_AR1.cc:91:39: note: in instantiation of function template specialization 'arma::operator-<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >' requested here
    mu_mean   = aux_muVar % (mean_xt1 - B*mean_xt);   
                                      ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:515:9: note: in instantiation of member function 'arma::gemm<false, false, false, false>::apply' requested here
        gemm<false, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Col<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
updateFunctions_AR1.cc:91:39: note: in instantiation of function template specialization 'arma::operator-<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >' requested here
    mu_mean   = aux_muVar % (mean_xt1 - B*mean_xt);   
                                      ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:523:9: note: in instantiation of member function 'arma::gemv<true, true, false>::apply' requested here
        gemv<true,         true, false>::apply(out.memptr(), B, A.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Col<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
updateFunctions_AR1.cc:91:39: note: in instantiation of function template specialization 'arma::operator-<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >' requested here
    mu_mean   = aux_muVar % (mean_xt1 - B*mean_xt);   
                                      ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:528:9: note: in instantiation of member function 'arma::gemv<false, true, false>::apply' requested here
        gemv<false,        true, false>::apply(out.memptr(), A, B.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Col<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
updateFunctions_AR1.cc:91:39: note: in instantiation of function template specialization 'arma::operator-<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >' requested here
    mu_mean   = aux_muVar % (mean_xt1 - B*mean_xt);   
                                      ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:532:9: note: in instantiation of member function 'arma::gemm<false, false, true, false>::apply' requested here
        gemm<false, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Col<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
updateFunctions_AR1.cc:91:39: note: in instantiation of function template specialization 'arma::operator-<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >' requested here
    mu_mean   = aux_muVar % (mean_xt1 - B*mean_xt);   
                                      ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:549:9: note: in instantiation of member function 'arma::gemm<true, false, false, false>::apply' requested here
        gemm<true, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Col<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
updateFunctions_AR1.cc:91:39: note: in instantiation of function template specialization 'arma::operator-<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >' requested here
    mu_mean   = aux_muVar % (mean_xt1 - B*mean_xt);   
                                      ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:566:9: note: in instantiation of member function 'arma::gemm<true, false, true, false>::apply' requested here
        gemm<true, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Col<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
updateFunctions_AR1.cc:91:39: note: in instantiation of function template specialization 'arma::operator-<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >' requested here
    mu_mean   = aux_muVar % (mean_xt1 - B*mean_xt);   
                                      ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:583:9: note: in instantiation of member function 'arma::gemm<false, true, false, false>::apply' requested here
        gemm<false, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Col<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
updateFunctions_AR1.cc:91:39: note: in instantiation of function template specialization 'arma::operator-<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >' requested here
    mu_mean   = aux_muVar % (mean_xt1 - B*mean_xt);   
                                      ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:600:9: note: in instantiation of member function 'arma::gemm<false, true, true, false>::apply' requested here
        gemm<false, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Col<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
updateFunctions_AR1.cc:91:39: note: in instantiation of function template specialization 'arma::operator-<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >' requested here
    mu_mean   = aux_muVar % (mean_xt1 - B*mean_xt);   
                                      ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:617:9: note: in instantiation of member function 'arma::gemm<true, true, false, false>::apply' requested here
        gemm<true, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Col<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
updateFunctions_AR1.cc:91:39: note: in instantiation of function template specialization 'arma::operator-<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >' requested here
    mu_mean   = aux_muVar % (mean_xt1 - B*mean_xt);   
                                      ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:634:9: note: in instantiation of member function 'arma::gemm<true, true, true, false>::apply' requested here
        gemm<true, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:67:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:137:3: note: in instantiation of function template specialization 'arma::glue_times_redirect2_helper<true>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect2_helper< is_supported_blas_type<eT>::value >::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<2>::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Mat<double>, arma::Col<double> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Proxy.hpp:654:7: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Mat<double>, arma::Col<double>, arma::glue_times>' requested here
    : Q(A)
      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/eGlue_meat.hpp:27:5: note: in instantiation of member function 'arma::Proxy<arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >::Proxy' requested here
  , P2(in_B)
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/operator_minus.hpp:141:10: note: in instantiation of member function 'arma::eGlue<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times>, arma::eglue_minus>::eGlue' requested here
  return eGlue<T1, T2, eglue_minus>(X, Y);
         ^
updateFunctions_AR1.cc:91:39: note: in instantiation of function template specialization 'arma::operator-<arma::Col<double>, arma::Glue<arma::Mat<double>, arma::Col<double>, arma::glue_times> >' requested here
    mu_mean   = aux_muVar % (mean_xt1 - B*mean_xt);   
                                      ^
In file included from updateFunctions_AR1.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
102 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include"   -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c updateFunctions_Splines.cc -o updateFunctions_Splines.o
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:130:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        switch (size - i){                          
                     ˜ ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:190:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:209:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:237:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:245:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:266:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:274:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:311:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( VECSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:312:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:319:22: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_VECTOR_ELT( x, i, element ) ;
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:320:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
                SET_STRING_ELT( names, i, Rf_mkChar(buf.c_str()) ) ; 
                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:343:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:344:48: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP names = PROTECT( Rf_allocVector( STRSXP, size ) ) ;
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:484:44: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( LGLSXP, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:443:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2967:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2968:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:448:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2228:42: warning: operand of ? changes signedness: 'sword' (aka 'int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword row_offset = (in_id < 0) ? -in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/subview_meat.hpp:2229:43: warning: operand of ? changes signedness: 'const sword' (aka 'const int') to 'const uword' (aka 'const unsigned int') [-Wsign-conversion]
  const uword col_offset = (in_id > 0) ?  in_id : 0;
              ˜˜˜˜˜˜˜˜˜˜                  ^˜˜˜˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:458:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpMat_iterators_meat.hpp:393:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:462:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/SpSubview_iterators_meat.hpp:581:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  uword cur_pos = -1;
        ˜˜˜˜˜˜˜   ^˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:50:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:173:76: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        unary_call( Language call_, int index ) : call(call_), proxy(call_,index){}
                                                               ˜˜˜˜˜       ^˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:91: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                             ˜˜˜˜˜˜       ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Language.h:190:113: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
        binary_call( Language call_, int index1, int index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
                                                                                                   ˜˜˜˜˜˜       ^˜˜˜˜˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:60:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/Datetime.h:40:40: warning: implicit conversion changes signedness: 'const unsigned int' to 'int' [-Wsign-conversion]
                int getMicroSeconds() const { return m_us; }
                                              ˜˜˜˜˜˜ ^˜˜˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:27:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:197:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:212:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:221:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:95:16: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        return RCPP_HASH(value) ;
        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:110:14: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      addr = RCPP_HASH(val_u.u[0] + val_u.u[1]);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:28:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/hash.h:28:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/SelfHash.h:119:18: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
          addr = RCPP_HASH((val & 0xffffffff) ^ (val >> 32));
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/hash/IndexHash.h:45:61: note: expanded from macro 'RCPP_HASH'
    #define RCPP_HASH(X) (3141592653U * ((unsigned int)(X)) >> (32 - k))
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:30:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp.h:70:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/functions.h:37:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:49:24: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32]
        return sugar::SeqLen( n ) ;
               ˜˜˜˜˜          ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:115:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:43: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                 ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloWrap.h:131:52: warning: implicit conversion changes signedness: 'int' to 'const size_t' (aka 'const unsigned long') [-Wsign-conversion]
            VECTOR res(::Rcpp::Dimension( n_rows , n_cols )) ;
                       ˜˜                          ^˜˜˜˜˜
updateFunctions_Splines.cc:55:18: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   samples     = ParamVec_C(0);
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:56:18: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   burnIn      = ParamVec_C(1);
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:57:18: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   thin        = ParamVec_C(2);
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:62:18: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
   M           = ParamVec_C(7);
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:80:12: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
  G = data.n_cols;
    ˜ ˜˜˜˜˜^˜˜˜˜˜
updateFunctions_Splines.cc:81:12: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
  T = data.n_rows; 
    ˜ ˜˜˜˜˜^˜˜˜˜˜
updateFunctions_Splines.cc:84:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  designMat.zeros(T, G*M);
  ˜˜˜˜˜˜˜˜˜       ^
updateFunctions_Splines.cc:84:23: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  designMat.zeros(T, G*M);
  ˜˜˜˜˜˜˜˜˜          ˜^˜
updateFunctions_Splines.cc:87:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      x  = data.col(g);
           ˜˜˜˜     ^
updateFunctions_Splines.cc:91:23: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      designMat.cols(g*M, (g+1)*M - 1) = bs;    
      ˜˜˜˜˜˜˜˜˜      ˜^˜
updateFunctions_Splines.cc:91:35: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      designMat.cols(g*M, (g+1)*M - 1) = bs;    
      ˜˜˜˜˜˜˜˜˜           ˜˜˜˜˜˜˜˜^˜˜
updateFunctions_Splines.cc:121:60: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  r.rows(0, t.n_elem - 2) = trans(generate_seq(1, t.n_elem - 1));
                                  ˜˜˜˜˜˜˜˜˜˜˜˜    ˜˜˜˜˜˜˜˜˜^˜˜
updateFunctions_Splines.cc:138:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  aux_seq.reshape(M, genes);
  ˜˜˜˜˜˜˜         ^
updateFunctions_Splines.cc:138:22: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  aux_seq.reshape(M, genes);
  ˜˜˜˜˜˜˜            ^˜˜˜˜
updateFunctions_Splines.cc:146:36: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  urowvec bases_on(gamma_ij.n_cols*M);
                                  ˜^
updateFunctions_Splines.cc:149:37: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    initBasesOn(bases_on, gamma_ij, i, M);
    ˜˜˜˜˜˜˜˜˜˜˜                     ^
updateFunctions_Splines.cc:162:23: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
  G        = links_on.n_elem;
           ˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
updateFunctions_Splines.cc:167:17: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    if(links_on[indx])
       ˜˜˜˜˜˜˜˜ ^˜˜˜
updateFunctions_Splines.cc:185:27: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  links_on = gamma_ij.row(i);
             ˜˜˜˜˜˜˜˜     ^
updateFunctions_Splines.cc:186:23: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
  G        = links_on.n_elem;
           ˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
updateFunctions_Splines.cc:191:17: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    if(links_on[indx])
       ˜˜˜˜˜˜˜˜ ^˜˜˜
updateFunctions_Splines.cc:209:9: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    vec[loop_var] = newVal;
    ˜˜˜ ^˜˜˜˜˜˜˜
updateFunctions_Splines.cc:209:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    vec[loop_var] = newVal;
                  ˜ ^˜˜˜˜˜
updateFunctions_Splines.cc:224:14: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  B.set_size(genes, M*genes);
  ˜          ^˜˜˜˜
updateFunctions_Splines.cc:224:22: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  B.set_size(genes, M*genes);
  ˜                 ˜^˜˜˜˜˜
updateFunctions_Splines.cc:225:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  tau_ij.set_size(genes, genes);
  ˜˜˜˜˜˜          ^˜˜˜˜
updateFunctions_Splines.cc:225:26: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  tau_ij.set_size(genes, genes);
  ˜˜˜˜˜˜                 ^˜˜˜˜
updateFunctions_Splines.cc:226:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  gamma_ij.set_size(genes, genes);
  ˜˜˜˜˜˜˜˜          ^˜˜˜˜
updateFunctions_Splines.cc:226:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  gamma_ij.set_size(genes, genes);
  ˜˜˜˜˜˜˜˜                 ^˜˜˜˜
updateFunctions_Splines.cc:227:16: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  eta.set_size(genes);
  ˜˜˜          ^˜˜˜˜
updateFunctions_Splines.cc:228:15: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  mu.set_size(genes);
  ˜˜          ^˜˜˜˜
updateFunctions_Splines.cc:244:9: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  mat P(M,M);
      ˜ ^
updateFunctions_Splines.cc:244:11: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  mat P(M,M);
      ˜   ^
updateFunctions_Splines.cc:249:9: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j,j)=6;
      ˜ ^
updateFunctions_Splines.cc:249:11: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j,j)=6;
      ˜   ^
updateFunctions_Splines.cc:250:9: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j,j-1)= -4;   P(j,j+1)= -4;
      ˜ ^
updateFunctions_Splines.cc:250:12: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j,j-1)= -4;   P(j,j+1)= -4;
      ˜   ˜^˜
updateFunctions_Splines.cc:250:25: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j,j-1)= -4;   P(j,j+1)= -4;
                      ˜ ^
updateFunctions_Splines.cc:250:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j,j-1)= -4;   P(j,j+1)= -4;
                      ˜   ˜^˜
updateFunctions_Splines.cc:251:10: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j-1,j)= -4;   P(j+1,j)= -4;
      ˜ ˜^˜
updateFunctions_Splines.cc:251:13: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j-1,j)= -4;   P(j+1,j)= -4;
      ˜     ^
updateFunctions_Splines.cc:251:26: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j-1,j)= -4;   P(j+1,j)= -4;
                      ˜ ˜^˜
updateFunctions_Splines.cc:251:29: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j-1,j)= -4;   P(j+1,j)= -4;
                      ˜     ^
updateFunctions_Splines.cc:252:9: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j,j-2) = 1;   P(j,j+2) = 1;
      ˜ ^
updateFunctions_Splines.cc:252:12: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j,j-2) = 1;   P(j,j+2) = 1;
      ˜   ˜^˜
updateFunctions_Splines.cc:252:25: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j,j-2) = 1;   P(j,j+2) = 1;
                      ˜ ^
updateFunctions_Splines.cc:252:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j,j-2) = 1;   P(j,j+2) = 1;
                      ˜   ˜^˜
updateFunctions_Splines.cc:253:10: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j-2,j) = 1;   P(j+2,j) = 1;
      ˜ ˜^˜
updateFunctions_Splines.cc:253:13: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j-2,j) = 1;   P(j+2,j) = 1;
      ˜     ^
updateFunctions_Splines.cc:253:26: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j-2,j) = 1;   P(j+2,j) = 1;
                      ˜ ˜^˜
updateFunctions_Splines.cc:253:29: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      P(j-2,j) = 1;   P(j+2,j) = 1;
                      ˜     ^
updateFunctions_Splines.cc:256:6: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-1,M-1)=1;
  ˜ ˜^˜
updateFunctions_Splines.cc:256:10: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-1,M-1)=1;
  ˜     ˜^˜
updateFunctions_Splines.cc:257:6: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-1,M-2)=-2; P(M-2,M-1)=-2;
  ˜ ˜^˜
updateFunctions_Splines.cc:257:10: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-1,M-2)=-2; P(M-2,M-1)=-2;
  ˜     ˜^˜
updateFunctions_Splines.cc:257:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-1,M-2)=-2; P(M-2,M-1)=-2;
                 ˜ ˜^˜
updateFunctions_Splines.cc:257:25: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-1,M-2)=-2; P(M-2,M-1)=-2;
                 ˜     ˜^˜
updateFunctions_Splines.cc:258:6: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-1,M-3)=1;  P(M-3,M-1)=1;
  ˜ ˜^˜
updateFunctions_Splines.cc:258:10: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-1,M-3)=1;  P(M-3,M-1)=1;
  ˜     ˜^˜
updateFunctions_Splines.cc:258:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-1,M-3)=1;  P(M-3,M-1)=1;
                 ˜ ˜^˜
updateFunctions_Splines.cc:258:25: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-1,M-3)=1;  P(M-3,M-1)=1;
                 ˜     ˜^˜
updateFunctions_Splines.cc:260:6: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-2,M-2)=5;
  ˜ ˜^˜
updateFunctions_Splines.cc:260:10: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-2,M-2)=5;
  ˜     ˜^˜
updateFunctions_Splines.cc:261:6: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-2,M-3)=-4;  P(M-3,M-2)=-4;
  ˜ ˜^˜
updateFunctions_Splines.cc:261:10: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-2,M-3)=-4;  P(M-3,M-2)=-4;
  ˜     ˜^˜
updateFunctions_Splines.cc:261:22: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-2,M-3)=-4;  P(M-3,M-2)=-4;
                  ˜ ˜^˜
updateFunctions_Splines.cc:261:26: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-2,M-3)=-4;  P(M-3,M-2)=-4;
                  ˜     ˜^˜
updateFunctions_Splines.cc:262:6: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-2,M-4)=1;  P(M-4,M-2)=1;
  ˜ ˜^˜
updateFunctions_Splines.cc:262:10: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-2,M-4)=1;  P(M-4,M-2)=1;
  ˜     ˜^˜
updateFunctions_Splines.cc:262:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-2,M-4)=1;  P(M-4,M-2)=1;
                 ˜ ˜^˜
updateFunctions_Splines.cc:262:25: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  P(M-2,M-4)=1;  P(M-4,M-2)=1;
                 ˜     ˜^˜
updateFunctions_Splines.cc:282:66: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  rowvec                                                    b_ij(M), b_i;
                                                            ˜˜˜˜ ^
updateFunctions_Splines.cc:288:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  b_i       = B.row(i);
              ˜     ^
updateFunctions_Splines.cc:290:26: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  logRosMinlogS.set_size(num_genes);
  ˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:294:23: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    indxReg = regsVec[j_tau];
              ˜˜˜˜˜˜˜ ^˜˜˜˜
updateFunctions_Splines.cc:303:17: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    if(links_on[j_tau])
       ˜˜˜˜˜˜˜˜ ^˜˜˜˜
updateFunctions_Splines.cc:305:37: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      b_ij               = b_i.cols(M * indxReg, M  * (indxReg + 1) - 1);
                                    ^ ˜
updateFunctions_Splines.cc:305:50: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      b_ij               = b_i.cols(M * indxReg, M  * (indxReg + 1) - 1);
                                                 ^  ˜
updateFunctions_Splines.cc:309:47: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      new_tau            = rTruncGamma(tau_ij(i, indxReg), shape_tau_me, scale_tau, truncate_me);
                                       ˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:310:14: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      tau_ij(i, indxReg) = new_tau;
      ˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:314:14: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      tau_ij(i, indxReg) = new_tau;
      ˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:316:10: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    logS(j_tau) = -log(tau0 * pow(new_tau, m_minus2_div2));
    ˜˜˜˜ ^˜˜˜˜
updateFunctions_Splines.cc:332:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  links_on  = gamma_ij.row(i);
              ˜˜˜˜˜˜˜˜     ^
updateFunctions_Splines.cc:333:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  b_i       = B.row(i);
              ˜     ^
updateFunctions_Splines.cc:345:17: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    if(links_on[j_tau])
       ˜˜˜˜˜˜˜˜ ^˜˜˜˜
updateFunctions_Splines.cc:347:37: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      b_ij             = b_i.cols(M * j_tau, M  * (j_tau + 1) - 1);
                         ˜˜˜      ˜˜^˜˜˜˜˜˜
updateFunctions_Splines.cc:347:63: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      b_ij             = b_i.cols(M * j_tau, M  * (j_tau + 1) - 1);
                         ˜˜˜                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
updateFunctions_Splines.cc:351:14: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      tau_ij(i, j_tau) = rTruncGamma(tau_ij(i, j_tau), shape_tau_me, scale_tau, truncate_me);
      ˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:351:17: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      tau_ij(i, j_tau) = rTruncGamma(tau_ij(i, j_tau), shape_tau_me, scale_tau, truncate_me);
      ˜˜˜˜˜˜    ^˜˜˜˜
updateFunctions_Splines.cc:351:45: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      tau_ij(i, j_tau) = rTruncGamma(tau_ij(i, j_tau), shape_tau_me, scale_tau, truncate_me);
                                     ˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:351:48: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      tau_ij(i, j_tau) = rTruncGamma(tau_ij(i, j_tau), shape_tau_me, scale_tau, truncate_me);
                                     ˜˜˜˜˜˜    ^˜˜˜˜
updateFunctions_Splines.cc:354:14: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      tau_ij(i, j_tau) = truncate_me*pow(uni_rnd, a_pareto_inv);
      ˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:354:17: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      tau_ij(i, j_tau) = truncate_me*pow(uni_rnd, a_pareto_inv);
      ˜˜˜˜˜˜    ^˜˜˜˜
updateFunctions_Splines.cc:356:10: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    logS(j_tau) = -log(tau0 * pow(tau_ij(i,j_tau), m_minus2_div2));
    ˜˜˜˜ ^˜˜˜˜
updateFunctions_Splines.cc:356:42: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    logS(j_tau) = -log(tau0 * pow(tau_ij(i,j_tau), m_minus2_div2));
                                  ˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:356:44: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    logS(j_tau) = -log(tau0 * pow(tau_ij(i,j_tau), m_minus2_div2));
                                  ˜˜˜˜˜˜   ^˜˜˜˜
updateFunctions_Splines.cc:407:38: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    subMe      = smallPriorMat*tau_i[block_j];
                               ˜˜˜˜˜ ^˜˜˜˜˜˜
updateFunctions_Splines.cc:412:25: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    priorWithTau.submat(start_indx, start_indx, end_indx, end_indx) = subMe; 
    ˜˜˜˜˜˜˜˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:412:37: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    priorWithTau.submat(start_indx, start_indx, end_indx, end_indx) = subMe; 
    ˜˜˜˜˜˜˜˜˜˜˜˜                    ^˜˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:412:49: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    priorWithTau.submat(start_indx, start_indx, end_indx, end_indx) = subMe; 
    ˜˜˜˜˜˜˜˜˜˜˜˜                                ^˜˜˜˜˜˜˜
updateFunctions_Splines.cc:412:59: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    priorWithTau.submat(start_indx, start_indx, end_indx, end_indx) = subMe; 
    ˜˜˜˜˜˜˜˜˜˜˜˜                                          ^˜˜˜˜˜˜˜
updateFunctions_Splines.cc:421:25: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  urowvec     bases_on(M*genes), links_on;
              ˜˜˜˜˜˜˜˜ ˜^˜˜˜˜˜
updateFunctions_Splines.cc:424:36: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  ucolvec                  seq_rnd(genes);
                           ˜˜˜˜˜˜˜ ^˜˜˜˜
updateFunctions_Splines.cc:428:30: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  links_on    = gamma_ij.row(i);
                ˜˜˜˜˜˜˜˜     ^
updateFunctions_Splines.cc:430:65: warning: implicit conversion changes signedness: 'int' to 'const unsigned int' [-Wsign-conversion]
  calc_logMVPDF_withBases(logMVPDF_Old, FullprecB, meanBNoPrec, i, bases_on);      
  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                                       ^
updateFunctions_Splines.cc:438:9: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    j = seq_rnd[j_loop];
      ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:438:17: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    j = seq_rnd[j_loop];
        ˜˜˜˜˜˜˜ ^˜˜˜˜˜
updateFunctions_Splines.cc:448:16: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  gamma_ij.row(i)= links_on; 
  ˜˜˜˜˜˜˜˜     ^
updateFunctions_Splines.cc:461:34: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  urowvec               bases_on(M*numRegsVec(i));
                                 ^˜
updateFunctions_Splines.cc:461:47: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  urowvec               bases_on(M*numRegsVec(i));
                                   ˜˜˜˜˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:471:65: warning: implicit conversion changes signedness: 'int' to 'const unsigned int' [-Wsign-conversion]
  calc_logMVPDF_withBases(logMVPDF_Old, FullprecB, meanBNoPrec, i, bases_on);      
  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                                       ^
updateFunctions_Splines.cc:474:31: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  seq_rnd.set_size(numRegsVec(i));
                   ˜˜˜˜˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:481:9: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    j = seq_rnd[j_loop];
      ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:481:17: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    j = seq_rnd[j_loop];
        ˜˜˜˜˜˜˜ ^˜˜˜˜˜
updateFunctions_Splines.cc:483:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    if (updateVec(j))
        ˜˜˜˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:510:27: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    aux_denominator = eta(i)*time_m;    
                      ˜˜˜ ^
updateFunctions_Splines.cc:513:38: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    mu_mean   = aux_muVar * mean_xt1(i) - xhat_1(i);       
                            ˜˜˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:513:50: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    mu_mean   = aux_muVar * mean_xt1(i) - xhat_1(i);       
                                          ˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:516:8: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    mu(i) = Rf_rnorm(mu_mean, mu_sd);
    ˜˜ ^
updateFunctions_Splines.cc:554:25: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  mat           indiv_f(time_m, genes*genes);
                ˜˜˜˜˜˜˜ ^˜˜˜˜˜
updateFunctions_Splines.cc:554:38: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  mat           indiv_f(time_m, genes*genes);
                ˜˜˜˜˜˜˜         ˜˜˜˜˜^˜˜˜˜˜
updateFunctions_Splines.cc:560:23: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    B_i = trans(B.row(i));
                ˜     ^
updateFunctions_Splines.cc:565:41: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      spline_function_ij       = Y.cols(start_indx, end_indx) * B_i.rows(start_indx, end_indx);
                                 ˜      ^˜˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:565:53: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      spline_function_ij       = Y.cols(start_indx, end_indx) * B_i.rows(start_indx, end_indx);
                                 ˜                  ^˜˜˜˜˜˜˜
updateFunctions_Splines.cc:565:74: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      spline_function_ij       = Y.cols(start_indx, end_indx) * B_i.rows(start_indx, end_indx);
                                                                ˜˜˜      ^˜˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:565:86: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      spline_function_ij       = Y.cols(start_indx, end_indx) * B_i.rows(start_indx, end_indx);
                                                                ˜˜˜                  ^˜˜˜˜˜˜˜
updateFunctions_Splines.cc:566:27: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      indiv_f.col(genes*i + j) = spline_function_ij - mean(spline_function_ij); 
      ˜˜˜˜˜˜˜     ˜˜˜˜˜˜˜˜^˜˜
updateFunctions_Splines.cc:568:20: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    full_F_sqr.col(i) = full_F_sqr.col(i) + square(sum(indiv_f.cols(genes*i, genes*(i+1) - 1), 1));
    ˜˜˜˜˜˜˜˜˜˜     ^
updateFunctions_Splines.cc:568:40: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    full_F_sqr.col(i) = full_F_sqr.col(i) + square(sum(indiv_f.cols(genes*i, genes*(i+1) - 1), 1));
                        ˜˜˜˜˜˜˜˜˜˜     ^
updateFunctions_Splines.cc:568:74: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    full_F_sqr.col(i) = full_F_sqr.col(i) + square(sum(indiv_f.cols(genes*i, genes*(i+1) - 1), 1));
                                                       ˜˜˜˜˜˜˜      ˜˜˜˜˜^˜
updateFunctions_Splines.cc:568:90: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
    full_F_sqr.col(i) = full_F_sqr.col(i) + square(sum(indiv_f.cols(genes*i, genes*(i+1) - 1), 1));
                                                       ˜˜˜˜˜˜˜               ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
updateFunctions_Splines.cc:590:28: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  gamma_old    = gamma_Row(j);
                 ˜˜˜˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:597:13: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  gamma_Row(j) = gamma_proposed;
  ˜˜˜˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:600:39: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  modifyBasesOnVector(bases_on, j, M, gamma_proposed);
  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:604:70: warning: implicit conversion changes signedness: 'int' to 'const unsigned int' [-Wsign-conversion]
  calc_logMVPDF_withBases(logMVPDF_new, lambxCPlusS, lambxCplusIdot, i, bases_on);      
  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                                            ^
updateFunctions_Splines.cc:620:27: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  hastingsRatio = sumLogs[j] + 0.5 *(logMVPDF_1 - logMVPDF_0);
                  ˜˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:642:17: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
      gamma_Row(j) = gamma_old;
      ˜˜˜˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:643:43: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      modifyBasesOnVector(bases_on, j, M, gamma_old);
      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜˜˜˜
updateFunctions_Splines.cc:688:19: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  priorMatB.zeros(M*numRegsVec(i), M*numRegsVec(i));
                  ^˜
updateFunctions_Splines.cc:688:32: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  priorMatB.zeros(M*numRegsVec(i), M*numRegsVec(i));
                    ˜˜˜˜˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:688:36: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  priorMatB.zeros(M*numRegsVec(i), M*numRegsVec(i));
                                   ^˜
updateFunctions_Splines.cc:688:49: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  priorMatB.zeros(M*numRegsVec(i), M*numRegsVec(i));
                                     ˜˜˜˜˜˜˜˜˜˜ ^
updateFunctions_Splines.cc:689:65: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
  priorMultiTau(priorMatB, smallPriorMat, tau_i, tau0, M, tau_i.n_elem);
  ˜˜˜˜˜˜˜˜˜˜˜˜˜                                           ˜˜˜˜˜˜^˜˜˜˜˜
updateFunctions_Splines.cc:691:19: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  FullprecB = eta(i) * FullprecB + priorMatB;
              ˜˜˜ ^
updateFunctions_Splines.cc:697:21: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  meanBNoPrec = eta(i)*(xt_plus1.row(i)-mu(i))*Y_red;
                ˜˜˜ ^
updateFunctions_Splines.cc:697:38: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  meanBNoPrec = eta(i)*(xt_plus1.row(i)-mu(i))*Y_red;
                        ˜˜˜˜˜˜˜˜     ^
updateFunctions_Splines.cc:697:44: warning: implicit conversion changes signedness: 'int' to 'uword' (aka 'unsigned int') [-Wsign-conversion]
  meanBNoPrec = eta(i)*(xt_plus1.row(i)-mu(i))*Y_red;
                                        ˜˜ ^
updateFunctions_Splines.cc:708:26: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  fixedBases.zeros(genes*M, genes);
                        ˜^
updateFunctions_Splines.cc:716:19: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
        fixedBases(row_i*M + base_k, col_j) = indxReg_i*M + base_k;
                        ˜^
updateFunctions_Splines.cc:716:50: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
        fixedBases(row_i*M + base_k, col_j) = indxReg_i*M + base_k;
                                                       ˜^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Date *, vector<Date, allocator<Date> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >, Rcpp::Date>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Date *, std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DateVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:104:16: warning: implicit conversion changes signedness: 'typename iterator_traits<__normal_iterator<const Datetime *, vector<Datetime, allocator<Datetime> > > >::difference_type' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t size = std::distance( first, last ) ;
               ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:178:9: note: in instantiation of function template specialization 'Rcpp::internal::primitive_range_wrap__impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return primitive_range_wrap__impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_sexptype_needscast<T>() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:364:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch___impl<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch___impl<InputIterator,T>( first, last, typename ::Rcpp::traits::r_type_traits<T>::r_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:374:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap_dispatch<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >, Rcpp::Datetime>' requested here
        return range_wrap_dispatch<InputIterator,typename traits::remove_reference<typename std::iterator_traits<InputIterator>::value_type>::type >( first, last ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:493:9: note: in instantiation of function template specialization 'Rcpp::internal::range_wrap<__gnu_cxx::__normal_iterator<const Rcpp::Datetime *, std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > > >' requested here
        return range_wrap( object.begin(), object.end() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:501:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_range_sugar_expression<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_range_sugar_expression( object, typename Rcpp::traits::is_sugar_expression<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:508:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
        return wrap_dispatch_unknown_iterable__logical( object, 
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:723:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown( object, typename ::Rcpp::traits::is_convertible<T,SEXP>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:740:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_eigen<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_eigen( object, typename traits::is_eigen_base<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:760:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return wrap_dispatch_unknown_importable( object, typename ::Rcpp::traits::is_importer<T>::type() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:863:9: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
               ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/DatetimeVector.h:54:47: note: in instantiation of function template specialization 'Rcpp::wrap<std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > >' requested here
        inline operator SEXP() const { return wrap( v ) ; } 
                                              ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:25:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/RcppCommon.h:117:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include/Rcpp/internal/wrap.h:106:43: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'R_xlen_t' (aka 'long') [-Wsign-conversion]
        SEXP x = PROTECT( Rf_allocVector( RTYPE, size ) );
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:506:9: note: in instantiation of member function 'arma::gemv<true, false, false>::apply' requested here
        gemv<true,         false, false>::apply(out.memptr(), B, A.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:674:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply<eT, do_trans_A, do_trans_B, use_alpha>(tmp, A,   B, alpha);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:169:3: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, true, false>' requested here
  glue_times::apply
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:116:19: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans>, arma::glue_times>' requested here
    const Mat<eT> tmp(X);
                  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:278:12: note: in instantiation of function template specialization 'arma::as_scalar_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
    return as_scalar_redirect<N_mat>::apply(X);
           ^
updateFunctions_Splines.cc:306:28: note: in instantiation of function template specialization 'arma::as_scalar<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
      b_Prior_prec_b     = as_scalar(b_ij * smallPriorMat * trans(b_ij));
                           ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, false, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:511:9: note: in instantiation of member function 'arma::gemv<false, false, false>::apply' requested here
        gemv<false,        false, false>::apply(out.memptr(), A, B.memptr());
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:674:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply<eT, do_trans_A, do_trans_B, use_alpha>(tmp, A,   B, alpha);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:169:3: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, true, false>' requested here
  glue_times::apply
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:116:19: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans>, arma::glue_times>' requested here
    const Mat<eT> tmp(X);
                  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:278:12: note: in instantiation of function template specialization 'arma::as_scalar_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
    return as_scalar_redirect<N_mat>::apply(X);
           ^
updateFunctions_Splines.cc:306:28: note: in instantiation of function template specialization 'arma::as_scalar<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
      b_Prior_prec_b     = as_scalar(b_ij * smallPriorMat * trans(b_ij));
                           ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:515:9: note: in instantiation of member function 'arma::gemm<false, false, false, false>::apply' requested here
        gemm<false, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:674:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply<eT, do_trans_A, do_trans_B, use_alpha>(tmp, A,   B, alpha);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:169:3: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, true, false>' requested here
  glue_times::apply
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:116:19: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans>, arma::glue_times>' requested here
    const Mat<eT> tmp(X);
                  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:278:12: note: in instantiation of function template specialization 'arma::as_scalar_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
    return as_scalar_redirect<N_mat>::apply(X);
           ^
updateFunctions_Splines.cc:306:28: note: in instantiation of function template specialization 'arma::as_scalar<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
      b_Prior_prec_b     = as_scalar(b_ij * smallPriorMat * trans(b_ij));
                           ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<true, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:523:9: note: in instantiation of member function 'arma::gemv<true, true, false>::apply' requested here
        gemv<true,         true, false>::apply(out.memptr(), B, A.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:674:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply<eT, do_trans_A, do_trans_B, use_alpha>(tmp, A,   B, alpha);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:169:3: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, true, false>' requested here
  glue_times::apply
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:116:19: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans>, arma::glue_times>' requested here
    const Mat<eT> tmp(X);
                  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:278:12: note: in instantiation of function template specialization 'arma::as_scalar_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
    return as_scalar_redirect<N_mat>::apply(X);
           ^
updateFunctions_Splines.cc:306:28: note: in instantiation of function template specialization 'arma::as_scalar<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
      b_Prior_prec_b     = as_scalar(b_ij * smallPriorMat * trans(b_ij));
                           ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:464:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  m           = A.n_rows;
                        ˜             ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:539:5: note: in instantiation of function template specialization 'arma::gemv<false, true, false>::apply_blas_type<double>' requested here
    gemv<do_trans_A, use_alpha, use_beta>::apply_blas_type(y,A,x,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:528:9: note: in instantiation of member function 'arma::gemv<false, true, false>::apply' requested here
        gemv<false,        true, false>::apply(out.memptr(), A, B.memptr(), alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:674:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply<eT, do_trans_A, do_trans_B, use_alpha>(tmp, A,   B, alpha);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:169:3: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, true, false>' requested here
  glue_times::apply
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:116:19: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans>, arma::glue_times>' requested here
    const Mat<eT> tmp(X);
                  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:278:12: note: in instantiation of function template specialization 'arma::as_scalar_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
    return as_scalar_redirect<N_mat>::apply(X);
           ^
updateFunctions_Splines.cc:306:28: note: in instantiation of function template specialization 'arma::as_scalar<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
      b_Prior_prec_b     = as_scalar(b_ij * smallPriorMat * trans(b_ij));
                           ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:429:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemv.hpp:465:41: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int  n           = A.n_cols;
                        ˜             ˜˜^˜˜˜˜˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:532:9: note: in instantiation of member function 'arma::gemm<false, false, true, false>::apply' requested here
        gemm<false, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:674:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply<eT, do_trans_A, do_trans_B, use_alpha>(tmp, A,   B, alpha);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:169:3: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, true, false>' requested here
  glue_times::apply
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:116:19: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans>, arma::glue_times>' requested here
    const Mat<eT> tmp(X);
                  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:278:12: note: in instantiation of function template specialization 'arma::as_scalar_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
    return as_scalar_redirect<N_mat>::apply(X);
           ^
updateFunctions_Splines.cc:306:28: note: in instantiation of function template specialization 'arma::as_scalar<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
      b_Prior_prec_b     = as_scalar(b_ij * smallPriorMat * trans(b_ij));
                           ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:549:9: note: in instantiation of member function 'arma::gemm<true, false, false, false>::apply' requested here
        gemm<true, false, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:674:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply<eT, do_trans_A, do_trans_B, use_alpha>(tmp, A,   B, alpha);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:169:3: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, true, false>' requested here
  glue_times::apply
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:116:19: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans>, arma::glue_times>' requested here
    const Mat<eT> tmp(X);
                  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:278:12: note: in instantiation of function template specialization 'arma::as_scalar_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
    return as_scalar_redirect<N_mat>::apply(X);
           ^
updateFunctions_Splines.cc:306:28: note: in instantiation of function template specialization 'arma::as_scalar<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
      b_Prior_prec_b     = as_scalar(b_ij * smallPriorMat * trans(b_ij));
                           ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, false, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:566:9: note: in instantiation of member function 'arma::gemm<true, false, true, false>::apply' requested here
        gemm<true, false, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:674:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply<eT, do_trans_A, do_trans_B, use_alpha>(tmp, A,   B, alpha);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:169:3: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, true, false>' requested here
  glue_times::apply
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:116:19: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans>, arma::glue_times>' requested here
    const Mat<eT> tmp(X);
                  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:278:12: note: in instantiation of function template specialization 'arma::as_scalar_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
    return as_scalar_redirect<N_mat>::apply(X);
           ^
updateFunctions_Splines.cc:306:28: note: in instantiation of function template specialization 'arma::as_scalar<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
      b_Prior_prec_b     = as_scalar(b_ij * smallPriorMat * trans(b_ij));
                           ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:583:9: note: in instantiation of member function 'arma::gemm<false, true, false, false>::apply' requested here
        gemm<false, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:674:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply<eT, do_trans_A, do_trans_B, use_alpha>(tmp, A,   B, alpha);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:169:3: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, true, false>' requested here
  glue_times::apply
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:116:19: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans>, arma::glue_times>' requested here
    const Mat<eT> tmp(X);
                  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:278:12: note: in instantiation of function template specialization 'arma::as_scalar_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
    return as_scalar_redirect<N_mat>::apply(X);
           ^
updateFunctions_Splines.cc:306:28: note: in instantiation of function template specialization 'arma::as_scalar<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
      b_Prior_prec_b     = as_scalar(b_ij * smallPriorMat * trans(b_ij));
                           ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<false, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:600:9: note: in instantiation of member function 'arma::gemm<false, true, true, false>::apply' requested here
        gemm<false, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:674:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply<eT, do_trans_A, do_trans_B, use_alpha>(tmp, A,   B, alpha);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:169:3: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, true, false>' requested here
  glue_times::apply
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:116:19: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans>, arma::glue_times>' requested here
    const Mat<eT> tmp(X);
                  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:278:12: note: in instantiation of function template specialization 'arma::as_scalar_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
    return as_scalar_redirect<N_mat>::apply(X);
           ^
updateFunctions_Splines.cc:306:28: note: in instantiation of function template specialization 'arma::as_scalar<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
      b_Prior_prec_b     = as_scalar(b_ij * smallPriorMat * trans(b_ij));
                           ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, false, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:617:9: note: in instantiation of member function 'arma::gemm<true, true, false, false>::apply' requested here
        gemm<true, true, false, false>::apply(out, A, B);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:674:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply<eT, do_trans_A, do_trans_B, use_alpha>(tmp, A,   B, alpha);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:169:3: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, true, false>' requested here
  glue_times::apply
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:116:19: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans>, arma::glue_times>' requested here
    const Mat<eT> tmp(X);
                  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:278:12: note: in instantiation of function template specialization 'arma::as_scalar_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
    return as_scalar_redirect<N_mat>::apply(X);
           ^
updateFunctions_Splines.cc:306:28: note: in instantiation of function template specialization 'arma::as_scalar<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
      b_Prior_prec_b     = as_scalar(b_ij * smallPriorMat * trans(b_ij));
                           ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:403:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int m   = C.n_rows;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:485:5: note: in instantiation of function template specialization 'arma::gemm<true, true, true, false>::apply_blas_type<double>' requested here
    gemm<do_trans_A, do_trans_B, use_alpha, use_beta>::apply_blas_type(C,A,B,alpha,beta);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:634:9: note: in instantiation of member function 'arma::gemm<true, true, true, false>::apply' requested here
        gemm<true, true, true, false>::apply(out, A, B, alpha);
        ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:674:5: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, false>' requested here
    glue_times::apply<eT, do_trans_A, do_trans_B, use_alpha>(tmp, A,   B, alpha);
    ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:169:3: note: in instantiation of function template specialization 'arma::glue_times::apply<double, false, false, true, false>' requested here
  glue_times::apply
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/glue_times_meat.hpp:234:3: note: in instantiation of function template specialization 'arma::glue_times_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_times_redirect<N_mat>::apply(out, X);
  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3918:14: note: in instantiation of function template specialization 'arma::glue_times::apply<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
  glue_type::apply(*this, X);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:116:19: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans>, arma::glue_times>' requested here
    const Mat<eT> tmp(X);
                  ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/fn_as_scalar.hpp:278:12: note: in instantiation of function template specialization 'arma::as_scalar_redirect<3>::apply<arma::Row<double>, arma::Mat<double>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
    return as_scalar_redirect<N_mat>::apply(X);
           ^
updateFunctions_Splines.cc:306:28: note: in instantiation of function template specialization 'arma::as_scalar<arma::Glue<arma::Row<double>, arma::Mat<double>, arma::glue_times>, arma::Op<arma::Row<double>, arma::op_htrans> >' requested here
      b_Prior_prec_b     = as_scalar(b_ij * smallPriorMat * trans(b_ij));
                           ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:430:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:404:32: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int n   = C.n_cols;
                       ˜     ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:47: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                    ˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/gemm.hpp:405:58: warning: operand of ? changes signedness: 'const uword' (aka 'const unsigned int') to 'const blas_int' (aka 'const int') [-Wsign-conversion]
        const blas_int k   = (do_trans_A) ? A.n_rows : A.n_cols;
                       ˜                               ˜˜^˜˜˜˜˜
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:439:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/auxlib_meat.hpp:374:30: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'blas_int' (aka 'int') [-Wsign-conversion]
    blas_int n_rows    = out.n_rows;
             ˜˜˜˜˜˜      ˜˜˜˜^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/auxlib_meat.hpp:71:14: note: in instantiation of function template specialization 'arma::auxlib::inv_inplace_lapack<double>' requested here
    status = auxlib::inv_inplace_lapack(out);
             ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/op_inv_meat.hpp:54:39: note: in instantiation of function template specialization 'arma::auxlib::inv<double>' requested here
    const bool status = (mode == 0) ? auxlib::inv(out, X.m) : auxlib::inv(out, X.m, true);
                                      ^
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:3548:12: note: in instantiation of function template specialization 'arma::op_inv::apply<arma::Mat<double> >' requested here
  op_type::apply(*this, X);
           ^
updateFunctions_Splines.cc:538:25: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::op_inv>' requested here
      covarianceMatrixB = inv(lambxCPlusSReduced);
                        ^
In file included from updateFunctions_Splines.cc:5:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:36:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo:439:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include/armadillo_bits/auxlib_meat.hpp:375:30: warning: implicit conversion changes signedness: 'const uword' (aka 'const unsigned int') to 'blas_int' (aka 'int') [-Wsign-conversion]
    blas_int n_cols    = out.n_cols;
             ˜˜˜˜˜˜      ˜˜˜˜^˜˜˜˜˜
231 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o GRENITS.so AR1_Gauss_biocond.o AR1_Student_biocond.o AR1_biocond.o PSplines_biocond.o R_C_interface.o ReadMCMCFiles.o commonFunctions.o functionsErrorModel.o matrixManipulationFunctions.o updateFunctions_AR1.o updateFunctions_Splines.o /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/lib/libRcpp.a -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/GRENITS.buildbin-libdir/GRENITS/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GRENITS)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GRENITS.buildbin-libdir/GRENITS/libs//GRENITS.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "GRENITS.buildbin-libdir/GRENITS/libs//GRENITS.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "GRENITS.buildbin-libdir/GRENITS/libs//GRENITS.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "GRENITS.buildbin-libdir/GRENITS/libs//GRENITS.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "GRENITS.buildbin-libdir/GRENITS/libs//GRENITS.so"
Summary

Command output
