BioC 2.12: CHECK report for DTA on petty

Package: DTA

Version: 2.6.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DTA_2.6.0.tar.gz

StartedAt: 2013-10-08 22:13:15 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 22:23:39 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 624.0 seconds

RetCode: 0

Status:  OK

CheckDir: DTA.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/DTA.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'DTA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DTA' version '2.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'DTA' can be installed ... [3s/4s] OK
* checking installed package size ... NOTE
  installed size is 11.3Mb
  sub-directories of 1Mb or more:
    data   6.8Mb
    doc    4.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [545s/554s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
DTA.dynamic.generate 199.856 20.159 224.249
DTA.estimate         127.228  6.395 135.868
DTA.generate         107.157  5.065 113.261
DTA.dynamic.estimate  72.901  0.612  74.958
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/DTA.Rcheck/00check.log'
for details.

* installing *source* package 'DTA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DTA)

name	user	system	elapsed
DTA-package	0.007	0.001	0.006
DTA.dynamic.estimate	72.901	0.612	74.958
DTA.dynamic.generate	199.856	20.159	224.249
DTA.estimate	127.228	6.395	135.868
DTA.generate	107.157	5.065	113.261
DTA.map.it	0.002	0.003	0.006
DTA.normalize	0.002	0.003	0.005
DTA.phenomat	0.004	0.007	0.011
DTA.plot.it	0.045	0.026	0.134
tls	2.164	0.907	3.073