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Package 478/658HostnameOS / ArchBUILDCHECKBUILD BIN
plateCore 1.17.0
Errol Strain
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/plateCore
Last Changed Rev: 70052 / Revision: 74774
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: plateCore
Version: 1.17.0
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings plateCore_1.17.0.tar.gz
StartedAt: 2013-03-25 03:48:39 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 03:53:40 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 300.5 seconds
RetCode: 0
Status:  OK 
CheckDir: plateCore.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/plateCore.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘plateCore/DESCRIPTION’ ... OK
* this is package ‘plateCore’ version ‘1.17.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘plateCore’ can be installed ... [14s/20s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
panel.xyplot.flowPlate: warning in filterBoundary(filter =
  filter[[nm]], parameters = c(channel.x.name, channel.y.name), frame =
  frames[[nm]]): partial argument match of 'filter' to 'filter.object'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [148s/152s] OK
Examples with CPU or elapsed time > 5s
                            user system elapsed
summaryStats-methods      18.185  0.072  18.392
applyControlGates-methods 17.289  0.008  17.389
mfiPlot-methods           16.789  0.052  18.278
on-methods                11.561  0.036  11.713
fpbind-methods            11.289  0.068  11.428
compensate-methods         8.009  0.052   8.060
Subset-methods             7.804  0.092   7.968
fixAutoFl-methods          6.504  0.028   6.560
plotPlate-methods          4.925  0.008   5.318
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/plateCore.Rcheck/00check.log’
for details.

plateCore.Rcheck/00install.out:

* installing *source* package ‘plateCore’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘plateCoreVig.Rnw’ 
** testing if installed package can be loaded
* DONE (plateCore)

plateCore.Rcheck/plateCore-Ex.timings:

nameusersystemelapsed
Subset-methods7.8040.0927.968
applyControlGates-methods17.289 0.00817.389
compensate-methods8.0090.0528.060
compensationSet0.4800.0240.501
densityplot-methods1.7520.0241.775
fixAutoFl-methods6.5040.0286.560
flowPlate-class4.2330.0084.300
flowPlate-method4.6120.0204.870
fpbind-methods11.289 0.06811.428
getGroups-methods1.9120.0161.958
gutterPlot-methods1.6800.0201.716
mfiPlot-methods16.789 0.05218.278
on-methods11.561 0.03611.713
panel.densityplot.flowPlate2.1920.0322.228
panel.xyplot.flowPlate1.9400.0081.994
plateCore-package3.8840.0084.418
plateSet-methods3.7920.0123.902
plotPlate-methods4.9250.0085.318
prepanel.densityplot.flowPlate2.1400.0162.196
prepanel.xyplot.flowPlate1.7800.0201.809
setControlGates-methods4.5480.0164.635
summaryStats-methods18.185 0.07218.392
wellAnnotation-methods1.6970.0161.792
xyplot-methods2.2400.0002.351