Package: mBPCR

Version: 1.13.0

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings mBPCR_1.13.0.tar.gz

StartedAt: 2013-03-25 02:55:04 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 03:01:04 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 359.2 seconds

RetCode: 0

Status:  OK

CheckDir: mBPCR.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/mBPCR.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mBPCR/DESCRIPTION’ ... OK
* this is package ‘mBPCR’ version ‘1.13.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mBPCR’ can be installed ... [27s/28s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [98s/100s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
plotEstProfile      38.234  0.044  38.734
writeEstProfile     18.322  0.004  18.475
estProfileWithMBPCR 17.405  0.056  18.125
computeMBPCR        10.093  0.064  10.935
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘mBPCR’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘mBPCR.Rnw’ 
** testing if installed package can be loaded
* DONE (mBPCR)

name	user	system	elapsed
computeMBPCR	10.093	0.064	10.935
estGlobParam	0.032	0.004	0.036
estProfileWithMBPCR	17.405	0.056	18.125
estProfileWithMBPCRforOligoSnpSet	0.024	0.004	0.028
importCNData	0.116	0.012	0.129
logAdd	0.028	0.000	0.030
plotEstProfile	38.234	0.044	38.734
writeEstProfile	18.322	0.004	18.475