Package: PAnnBuilder

Version: 1.23.0

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings PAnnBuilder_1.23.0.tar.gz

StartedAt: 2013-03-25 03:32:50 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 03:35:53 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 183.1 seconds

RetCode: 0

Status:  OK

CheckDir: PAnnBuilder.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/PAnnBuilder.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PAnnBuilder/DESCRIPTION’ ... OK
* this is package ‘PAnnBuilder’ version ‘1.23.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PAnnBuilder’ can be installed ... [16s/17s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘PAnnBuilder/R/zzz.R’:
  .onLoad calls:
    require(Biobase)

Package startup functions should not change the search path.
See section ‘Good practice’ in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [9s/10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/PAnnBuilder.Rcheck/00check.log’
for details.

* installing *source* package ‘PAnnBuilder’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘PAnnBuilder.Rnw’ 
** testing if installed package can be loaded
* DONE (PAnnBuilder)

name	user	system	elapsed
GOABuilder_DB	0.024	0.000	0.027
HomoloGeneBuilder_DB	0.036	0.000	0.043
InParanoidBuilder_DB	0.036	0.000	0.037
PeptideAtlasBuilder_DB	0.028	0.004	0.032
bfBuilder_DB	0.028	0.004	0.031
crossBuilder_DB	0.024	0.016	0.040
dNameBuilder_DB	0.020	0.012	0.031
getSrcUrl	0.020	0.012	0.033
intBuilder_DB	0.032	0.016	0.052
loadFromUrl	0.012	0.008	0.019
pBaseBuilder_DB	0.036	0.020	0.056
pSeqBuilder_DB	0.056	0.024	0.145
ptmBuilder_DB	0.020	0.000	0.017
scopBuilder_DB	0.020	0.000	0.018
subcellBuilder_DB	0.028	0.000	0.038