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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 221/247HostnameOSArchBUILDCHECKBUILD BIN

simulatorAPMS

1.9.0

Tony Chiang
Last Changed Date: 2007-04-24 11:31:42 -0700
Last Changed Rev: 24217
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK [ OK ] OK 
pitt Mac OS X (10.4.10) i386  OK  OK  OK 
Package: simulatorAPMS
Version: 1.9.0
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check simulatorAPMS_1.9.0.tar.gz
RetCode: 0
Time: 228.7 seconds
Status: OK
CheckDir: simulatorAPMS.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/simulatorAPMS.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'simulatorAPMS/DESCRIPTION' ... OK
* this is package 'simulatorAPMS' version '1.9.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'simulatorAPMS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating simulatorAPMS-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating simulatorAPMS-manual.tex ... OK
* checking simulatorAPMS-manual.tex ... OK

simulatorAPMS.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/simulatorAPMS.Rcheck


---------- Making package simulatorAPMS ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: unmatched right brace in 'filteredProt' on or after line 14
Note: unmatched right brace in 'filteredProt.Rd' on or after line 14
 >>> Building/Updating help pages for package 'simulatorAPMS'
     Formats: text html latex example chm 
  APComEX                           text    html    latex   example chm
  PPIEX                             text    html    latex   example chm
  TSNMatrix                         text    html    latex   example chm
  applyDeformationError             text    html    latex   example chm
  applyFNErrors                     text    html    latex   example chm
  applyFPErrors                     text    html    latex   example chm
  applyStickyError                  text    html    latex   example chm
  compIndep                         text    html    latex   example chm
  filteredProt                      text    html    latex   example chm
  fullSimEX                         text    html    latex   example chm
  missedProtEX                      text    html    latex   example chm
  missedProtHMSPCI                  text    html    latex   example chm
  recordSticky                      text    html    latex   example chm
  runAPComplex                      text    html    latex   example chm
  runCompIndep                      text    html    latex   example chm
  runSimEX                          text    html    latex   example chm
  runSimulators                     text    html    latex   example chm
  simEX                             text    html    latex   example chm
  simulator                         text    html    latex   example chm
  simulatorD                        text    html    latex   example chm
  simulatorS                        text    html    latex   example chm
  vBaits                            text    html    latex   example chm
  vBaitsEX                          text    html    latex   example chm
  vDeformEX                         text    html    latex   example chm
  vDeformed                         text    html    latex   example chm
  vDeformedEX                       text    html    latex   example chm
  vStickyEX                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\simulatorAPMS.Rcheck\00_pkg_src\simulatorAPMS\chm\simulatorAPMS.chm


Compile time: 0 minutes, 0 seconds
28	Topics
78	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\simulatorAPMS.Rcheck\00_pkg_src\simulatorAPMS\chm\simulatorAPMS.chm, 36,854 bytes
Compression decreased file by 30,473 bytes.
  adding MD5 sums

* DONE (simulatorAPMS)