Package: ppiStats

Version: 1.3.8

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check ppiStats_1.3.8.tar.gz

RetCode: 0

Time: 535.4 seconds

Status: WARNINGS

CheckDir: ppiStats.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/ppiStats.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'ppiStats/DESCRIPTION' ... OK
* this is package 'ppiStats' version '1.3.8'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiStats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ppiHGTest4GO: possible error in htmlReport(results, file =
  paste(filename, ".html", sep = ""), append = append, label =
  paste(label, ": ", typeGeneSet, sep = ""), categorySize = cs): unused
  argument(s) (categorySize = cs)
ppiHGTest4PFAM: possible error in htmlReport(results, file =
  paste(filename, ".html", sep = ""), append = append, label =
  paste(label, ": ", typeGeneSet, sep = ""), categorySize = cs): unused
  argument(s) (categorySize = cs)
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ppiStats-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignettes without corresponding PDF:
  /extra/loc/biocbuild/bbs-2.1-bioc/meat/ppiStats.Rcheck/00_pkg_src/ppiStats/inst/doc/supp.Rnw
--- running texi2dvi on vignettes
/loc/biocbuild/bbs-2.1-bioc/R/bin/texi2dvi: pdflatex exited with bad status, quitting.
/loc/biocbuild/bbs-2.1-bioc/R/bin/texi2dvi: see supp.log for errors.
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = TRUE) : 
  running texi2dvi on 'supp.tex' failed
Calls: checkVignettes -> texi2dvi
recover called non-interactively; frames dumped, use debugger() to view
* creating ppiStats-manual.tex ... OK
* checking ppiStats-manual.tex ... OK

WARNING: There was 1 warning, see
  /extra/loc/biocbuild/bbs-2.1-bioc/meat/ppiStats.Rcheck/00check.log
for details

* Installing *source* package 'ppiStats' ...
** R
** inst
** help
 >>> Building/Updating help pages for package 'ppiStats'
     Formats: text html latex example 
  assessSymmetry                    text    html    latex   example
  bpMatrix                          text    html    latex   example
  calcInOutDegStats                 text    html    latex   example
  estErrProbMethodOfMoments         text    html    latex   example
  genBPGraph                        text    html    latex   example
  hgParams                          text    html    latex   example
  hgTests                           text    html    latex   example
  idProteinErrorType                text    html    latex   example
  idProteinType                     text    html    latex   example
  nullDistDoublyTestedEdges         text    html    latex   example
  twPERM                            text    html    latex   example
** building package indices ...
* DONE (ppiStats)