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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 125/247HostnameOSArchBUILDCHECKBUILD BIN

logicFS

1.7.6

Holger Schwender
Last Changed Date: 2007-07-24 05:30:19 -0700
Last Changed Rev: 25953
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
pitt Mac OS X (10.4.10) i386  OK [ OK ] OK 
Package: logicFS
Version: 1.7.6
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check logicFS_1.7.6.tar.gz
RetCode: 0
Time: 45.0 seconds
Status: OK
CheckDir: logicFS.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/logicFS.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-10 r42465)
* checking for file 'logicFS/DESCRIPTION' ... OK
* this is package 'logicFS' version '1.7.6'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'logicFS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
logic.bagging.default: no visible binding for global variable 'cl'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating logicFS-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating logicFS-manual.tex ... OK
* checking logicFS-manual.tex ... OK

logicFS.Rcheck/00install.out:

* Installing *source* package 'logicFS' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: LogicReg
Loading required package: survival
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'logicFS'
     Formats: text html latex example 
  data.logicfs                      text    html    latex
  getMatEval                        text    html    latex
  logic.bagging                     text    html    latex   example
  logic.oob                         text    html    latex
  logic.pimp                        text    html    latex
  logicFS-internal                  text    html    latex
  logicFS                           text    html    latex   example
  make.snp.dummy                    text    html    latex
  minDNF                            text    html    latex
  plot.logicFS                      text    html    latex
  predict.logicBagg                 text    html    latex
  print.logicFS                     text    html    latex
  vim.chisq                         text    html    latex
  vim.ebam                          text    html    latex
  vim.logicFS                       text    html    latex
  vim.norm                          text    html    latex
** building package indices ...
* DONE (logicFS)