Package: keggorth

Version: 0.0-4

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check keggorth_0.0-4.tar.gz

RetCode: 0

Time: 46.0 seconds

Status: WARNINGS

CheckDir: keggorth.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/keggorth.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'keggorth/DESCRIPTION' ... OK
* this is package 'keggorth' version '0.0-4'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'keggorth' can be installed ... WARNING
Found the following significant warnings:
       missing link(s):  graphNEL-class
See 'E:/biocbld/bbs-2.1-bioc/meat/keggorth.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getKOprobes: no visible binding for global variable 'KOgraph'
getKOtags: no visible binding for global variable 'KOgraph'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating keggorth-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating keggorth-manual.tex ... OK
* checking keggorth-manual.tex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.1-bioc/meat/keggorth.Rcheck/00check.log
for details

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/keggorth.Rcheck


---------- Making package keggorth ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'keggorth'
     Formats: text html latex example chm 
  getKOprobes                       text    html    latex   example chm
  keggDF2graph                      text    html    latex   example chm
     missing link(s):  graphNEL-class
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\keggorth.Rcheck\00_pkg_src\keggorth\chm\keggorth.chm


Compile time: 0 minutes, 0 seconds
3	Topics
7	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\keggorth.Rcheck\00_pkg_src\keggorth\chm\keggorth.chm, 17,645 bytes
Compression increased file by 6,969 bytes.
  adding MD5 sums

* DONE (keggorth)