Package: GGtools

Version: 1.5.3

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build GGtools

RetCode: 0

Time: 94.2 seconds

Status: OK

PackageFile: GGtools_1.5.3.tar.gz

* checking for file 'GGtools/DESCRIPTION' ... OK
* preparing 'GGtools':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'GGtools' ...
** libs
** arch - i386
g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -Wall -march=nocona -c minfra.cc -o minfra.o
minfra.cc: In function 'matrix operator/(matrix&, matrix&)':
minfra.cc:459: warning: unused variable 'a2c'
minfra.cc: In function 'matrix delete_col(matrix, int)':
minfra.cc:545: warning: unused variable 'ncop'
minfra.cc:545: warning: unused variable 'nresel'
minfra.cc:545: warning: unused variable 'skip'
minfra.cc:546: warning: unused variable 'resbase'
minfra.cc:546: warning: unused variable 'Xbase'
minfra.cc: In function 'int split(matrix&, matrix&, matrix*)':
minfra.cc:1210: warning: unused variable 'j'
minfra.cc: In function 'matrix* split(matrix&, matrix&)':
minfra.cc:1245: warning: unused variable 'j'
g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GGtools.so minfra.o   -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c minfra.cc -o minfra.o
minfra.cc: In function 'matrix operator/(matrix&, matrix&)':
minfra.cc:459: warning: unused variable 'a2c'
minfra.cc: In function 'matrix delete_col(matrix, int)':
minfra.cc:545: warning: unused variable 'ncop'
minfra.cc:545: warning: unused variable 'nresel'
minfra.cc:545: warning: unused variable 'skip'
minfra.cc:546: warning: unused variable 'resbase'
minfra.cc:546: warning: unused variable 'Xbase'
minfra.cc: In function 'int split(matrix&, matrix&, matrix*)':
minfra.cc:1210: warning: unused variable 'j'
minfra.cc: In function 'matrix* split(matrix&, matrix&)':
minfra.cc:1245: warning: unused variable 'j'
g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GGtools.so minfra.o   -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: hgfocus
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: mgu74av2
** help
Note: unmatched right brace in 'snpMeta-class' on or after line 44
 >>> Building/Updating help pages for package 'GGtools'
     Formats: text html latex example 
  HM2rac                            text    html    latex   example
  HMworkflow                        text    html    latex   example
  Strains2rac                       text    html    latex   example
  geneLocs                          text    html    latex   example
  genoStrings                       text    html    latex   example
  make_racExSet                     text    html    latex   example
  oGtypeExSet-class                 text    html    latex   example
  plot_EvG                          text    html    latex   example
  racExSet-class                    text    html    latex   example
  snpMeta-class                     text    html    latex   example
  snpScreen                         text    html    latex   example
  snps                              text    html    latex   example
** building package indices ...
Loading required package: methods
* DONE (GGtools)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GGtools_1.5.3.tar.gz'