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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 66/247HostnameOSArchBUILDCHECKBUILD BIN

EBImage

2.1.20

Oleg Sklyar
Last Changed Date: 2007-08-24 17:16:24 -0700
Last Changed Rev: 26639
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  ERROR skipped
liverpool Windows Server 2003 R2 (32-bit) x64  OK  WARNINGS  OK 
pitt Mac OS X (10.4.10) i386  OK  ERROR [ OK ]
Package: EBImage
Version: 2.1.20
Command: /Users/biocbuild/BBS/utils/build-universal.sh EBImage_2.1.20.tar.gz /Library/Frameworks/R.framework/Resources/bin/R EBImage.buildbin-libdir
RetCode: 0
Time: 31.7 seconds
Status: OK
PackageFile: EBImage_2.1.20.tgz

Command output

                    INSTALLATION WITH 'R CMD INSTALL EBImage_2.1.20.tar.gz'

* Installing to library 'EBImage.buildbin-libdir'
* Installing *source* package 'EBImage' ...
checking for Magick-config... yes
* found ImageMagick version 6.3.3
* found ImageMagick includes in -I/usr/local/include
checking for pkg-config... no
checking for pkgconfig... (cached) no
* pkg-config/pkgconfig not found: compiling without GTK+ support
-----------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c EBImage.c -o EBImage.o
EBImage.c: In function 'R_unload_EBImage':
EBImage.c:137: warning: unused parameter 'winDll'
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c colors.c -o colors.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c conversions.c -o conversions.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c display.c -o display.o
display.c: In function 'lib_display':
display.c:42: warning: unused parameter 'nogtk'
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c drawable.c -o drawable.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c features_haralick.c -o features_haralick.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c features_hull.c -o features_hull.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c features_moments.c -o features_moments.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c features_zernike.c -o features_zernike.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c filters_distmap.c -o filters_distmap.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c filters_magick.c -o filters_magick.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c filters_morph.c -o filters_morph.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c filters_normalize.c -o filters_normalize.o
g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -march=nocona -c filters_propagate.cpp -o filters_propagate.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c filters_thresh.c -o filters_thresh.o
g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -march=nocona -c filters_watershed.cpp -o filters_watershed.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c io.c -o io.o
io.c: In function 'lib_chooseImages':
io.c:85: warning: unused parameter 'mode'
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c objects.c -o objects.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c tools.c -o tools.o
g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o EBImage.so EBImage.o colors.o conversions.o display.o drawable.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_distmap.o filters_magick.o filters_morph.o filters_normalize.o filters_propagate.o filters_thresh.o filters_watershed.o io.o objects.o tools.o -L/usr/local/lib -L/usr/X11R6/lib -L/usr/local/lib -lfreetype -lz -Wl,-framework,CoreServices,-framework,ApplicationServices -lMagick -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread -lWand -lMagick -lWand    -F/Library/Frameworks/R.framework/.. -framework R
** R
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'EBImage'
     Formats: text html latex example 
  EBImage-package                   text    html    latex
  Image.generic.methods             text    html    latex
  channel                           text    html    latex   example
  class.Image                       text    html    latex   example
  class.IndexedImage                text    html    latex   example
  constructors                      text    html    latex   example
  denoising                         text    html    latex   example
  display                           text    html    latex
  distmap                           text    html    latex   example
  drawable                          text    html    latex   example
  enhancing                         text    html    latex
  features-edge                     text    html    latex   example
  features-haralick                 text    html    latex
  features-hull                     text    html    latex
  features-moments                  text    html    latex   example
  features-zernike                  text    html    latex
  getFeatures                       text    html    latex
  input-output                      text    html    latex   example
  internals                         text    html    latex
  matchObjects                      text    html    latex
  morphology                        text    html    latex   example
  normalize                         text    html    latex   example
  paintObjects                      text    html    latex   example
  propagate                         text    html    latex   example
  rmObjects                         text    html    latex
  segmenting                        text    html    latex
  stackObjects                      text    html    latex
  thresholding                      text    html    latex   example
  tile                              text    html    latex
  transformations                   text    html    latex
  watershed                         text    html    latex   example
** building package indices ...
* DONE (EBImage)

                    INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --libs-only EBImage_2.1.20.tar.gz'

* Installing to library 'EBImage.buildbin-libdir'
* Installing *source* package 'EBImage' ...
checking for Magick-config... yes
* found ImageMagick version 6.3.3
* found ImageMagick includes in -I/usr/local/include
checking for pkg-config... no
checking for pkgconfig... (cached) no
* pkg-config/pkgconfig not found: compiling without GTK+ support
-----------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c EBImage.c -o EBImage.o
EBImage.c: In function 'R_unload_EBImage':
EBImage.c:137: warning: unused parameter 'winDll'
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c colors.c -o colors.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c conversions.c -o conversions.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c display.c -o display.o
display.c: In function 'lib_display':
display.c:42: warning: unused parameter 'nogtk'
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c drawable.c -o drawable.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c features_haralick.c -o features_haralick.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c features_hull.c -o features_hull.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c features_moments.c -o features_moments.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c features_zernike.c -o features_zernike.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c filters_distmap.c -o filters_distmap.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c filters_magick.c -o filters_magick.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c filters_morph.c -o filters_morph.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c filters_normalize.c -o filters_normalize.o
g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c filters_propagate.cpp -o filters_propagate.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c filters_thresh.c -o filters_thresh.o
g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c filters_watershed.cpp -o filters_watershed.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c io.c -o io.o
io.c: In function 'lib_chooseImages':
io.c:85: warning: unused parameter 'mode'
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c objects.c -o objects.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include   -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include  -fPIC  -g -O2 -Wall -c tools.c -o tools.o
g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o EBImage.so EBImage.o colors.o conversions.o display.o drawable.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_distmap.o filters_magick.o filters_morph.o filters_normalize.o filters_propagate.o filters_thresh.o filters_watershed.o io.o objects.o tools.o -L/usr/local/lib -L/usr/X11R6/lib -L/usr/local/lib -lfreetype -lz -Wl,-framework,CoreServices,-framework,ApplicationServices -lMagick -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread -lWand -lMagick -lWand    -F/Library/Frameworks/R.framework/.. -framework R
* DONE (EBImage)