Package: ecolitk

Version: 1.9.0

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check ecolitk_1.9.0.tar.gz

RetCode: 0

Time: 141.4 seconds

Status: WARNINGS

CheckDir: ecolitk.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/ecolitk.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-04-17 r41210)
* checking for file 'ecolitk/DESCRIPTION' ... OK
* this is package 'ecolitk' version '1.9.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ecolitk' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  ecoligenomeBNUM2GENBANK
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating ecolitk-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ecolitk-manual.tex ... OK
* checking ecolitk-manual.tex ... OK

WARNING: There was 1 warning, see
  D:/biocbld/bbs-2.1-bioc/meat/ecolitk.Rcheck/00check.log
for details

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/ecolitk.Rcheck


---------- Making package ecolitk ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'ecolitk'
     Formats: text html latex example chm 
  ecoli.data                        text    html    latex   example chm
  ecoligenome.operon                text    html    latex   example chm
  ecoligenomeBNUM                   text    html    latex           chm
  ecoligenomeBNUM2MULTIFUN          text    html    latex           chm
  gccontent                         text    html    latex           chm
  linkedmultiget                    text    html    latex   example chm
  multiFun                          text    html    latex   example chm
  pointsCircle                      text    html    latex   example chm
  polar2xy                          text    html    latex   example chm
  polygonChrom                      text    html    latex   example chm
  wstringapply                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\ecolitk.Rcheck\00_pkg_src\ecolitk\chm\ecolitk.chm


Compile time: 0 minutes, 0 seconds
12	Topics
45	Local links
4	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\ecolitk.Rcheck\00_pkg_src\ecolitk\chm\ecolitk.chm, 29,424 bytes
Compression decreased file by 13,213 bytes.
  adding MD5 sums

* DONE (ecolitk)