tenXplore

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see tenXplore.

ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

Installation

To install this package, start R (version "3.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tenXplore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tenXplore")

tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons	PDF	R Script
Reference Manual	PDF

Details

biocViews	DimensionReduction, ImmunoOncology, PrincipalComponent, SingleCell, Software, Transcriptomics
Version	1.6.0
In Bioconductor since	BioC 3.6 (R-3.4) (6.5 years)
License	Artistic-2.0
Depends	R (>= 3.4), shiny, restfulSE(>= 0.99.12)
Imports	methods, ontoProc(>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils
System Requirements
URL

See More

Suggests	org.Hs.eg.db, testthat, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tenXplore_1.6.0.tar.gz
Windows Binary	tenXplore_1.6.0.zip
Mac OS X 10.11 (El Capitan)	tenXplore_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tenXplore
Source Repository (Developer Access)	git clone [email protected]:packages/tenXplore
Bioc Package Browser	https://code.bioconductor.org/browse/tenXplore/
Package Short Url	https://bioconductor.org/packages/tenXplore/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive