restfulSE
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see restfulSE.
Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface
Bioconductor version: 3.9
This package provides functions and classes to interface with remote data stores by operating on SummarizedExperiment-like objects.
Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]
Maintainer: Shweta Gopaulakrishnan <reshg at channing.harvard.edu>
citation("restfulSE")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("restfulSE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("restfulSE")| restfulSE -- experiments with SE interface to remote HDF5 | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Coverage, Infrastructure, Sequencing, SingleCell, Software, Transcriptomics |
| Version | 1.6.1 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6), SummarizedExperiment, DelayedArray |
| Imports | utils, stats, methods, S4Vectors, Biobase, reshape2, AnnotationDbi, DBI, GO.db, rhdf5client, dplyr (>= 0.7.1), magrittr, bigrquery, ExperimentHub, AnnotationHub, rlang |
| System Requirements | |
| URL |
See More
| Suggests | knitr, testthat, Rtsne, org.Mm.eg.db, org.Hs.eg.db, BiocStyle, restfulSEData |
| Linking To | |
| Enhances | |
| Depends On Me | tenXplore |
| Imports Me | |
| Suggests Me | BiocOncoTK, BiocSklearn |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | restfulSE_1.6.1.tar.gz |
| Windows Binary | restfulSE_1.6.1.zip |
| Mac OS X 10.11 (El Capitan) | restfulSE_1.6.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/restfulSE |
| Source Repository (Developer Access) | git clone [email protected]:packages/restfulSE |
| Bioc Package Browser | https://code.bioconductor.org/browse/restfulSE/ |
| Package Short Url | https://bioconductor.org/packages/restfulSE/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |