netbenchmark
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see netbenchmark.
Benchmarking of several gene network inference methods
Bioconductor version: 3.9
This package implements a benchmarking of several gene network inference algorithms from gene expression data.
Author: Pau Bellot, Catharina Olsen, Patrick Meyer
Maintainer: Pau Bellot <pau.bellot at upc.edu>
citation("netbenchmark")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("netbenchmark")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("netbenchmark")| Netbenchmark | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GeneExpression, GraphAndNetwork, Microarray, Network, NetworkInference, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | CC BY-NC-SA 4.0 |
| Depends | grndata(>= 0.99.3) |
| Imports | Rcpp (>= 0.11.0), minet, GENIE3, c3net, PCIT, GeneNet, tools, pracma, Matrix, corpcor, fdrtool |
| System Requirements | |
| URL | https://imatge.upc.edu/netbenchmark/ |
See More
| Suggests | RUnit, BiocGenerics, knitr, graph |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | netbenchmark_1.16.0.tar.gz |
| Windows Binary | netbenchmark_1.16.0.zip |
| Mac OS X 10.11 (El Capitan) | netbenchmark_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/netbenchmark |
| Source Repository (Developer Access) | git clone [email protected]:packages/netbenchmark |
| Bioc Package Browser | https://code.bioconductor.org/browse/netbenchmark/ |
| Package Short Url | https://bioconductor.org/packages/netbenchmark/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |