GENIE3
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GENIE3.
GEne Network Inference with Ensemble of trees
Bioconductor version: 3.9
This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.
Author: Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts
Maintainer: Van Anh Huynh-Thu <vahuynh at ulg.ac.be>
Citation (from within R, enter
citation("GENIE3")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GENIE3")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GENIE3")| GENIE3 | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DecisionTree, GeneExpression, GraphAndNetwork, Network, NetworkInference, Regression, Software, SystemsBiology |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | stats, reshape2 |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | netbenchmark |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GENIE3_1.6.0.tar.gz |
| Windows Binary | GENIE3_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | GENIE3_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GENIE3 |
| Source Repository (Developer Access) | git clone [email protected]:packages/GENIE3 |
| Bioc Package Browser | https://code.bioconductor.org/browse/GENIE3/ |
| Package Short Url | https://bioconductor.org/packages/GENIE3/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |