PAPi
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PAPi.
Predict metabolic pathway activity based on metabolomics data
Bioconductor version: 3.9
The Pathway Activity Profiling - PAPi - is an R package for predicting the activity of metabolic pathways based solely on a metabolomics data set containing a list of metabolites identified and their respective abundances in different biological samples. PAPi generates hypothesis that improves the final biological interpretation. See Aggio, R.B.M; Ruggiero, K. and Villas-Boas, S.G. (2010) - Pathway Activity Profiling (PAPi): from metabolite profile to metabolic pathway activity. Bioinformatics.
Author: Raphael Aggio
Maintainer: Raphael Aggio <raphael.aggio at gmail.com>
citation("PAPi")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PAPi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PAPi")| Applying PAPi | R Script | |
| PAPi.pdf | ||
| Reference Manual |
Details
| biocViews | ImmunoOncology, MassSpectrometry, Metabolomics, Software |
| Version | 1.24.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
| License | GPL(>= 2) |
| Depends | R (>= 2.15.2), svDialogs, KEGGREST |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
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| Depends On Me | |
| Imports Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PAPi_1.24.0.tar.gz |
| Windows Binary | PAPi_1.24.0.zip |
| Mac OS X 10.11 (El Capitan) | PAPi_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PAPi |
| Source Repository (Developer Access) | git clone [email protected]:packages/PAPi |
| Bioc Package Browser | https://code.bioconductor.org/browse/PAPi/ |
| Package Short Url | https://bioconductor.org/packages/PAPi/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |