KEGGREST
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see KEGGREST.
Client-side REST access to KEGG
Bioconductor version: 3.9
A package that provides a client interface to the KEGG REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.
Author: Dan Tenenbaum
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("KEGGREST")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("KEGGREST")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("KEGGREST")
Accessing the KEGG REST API | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, KEGG, Pathways, Software, ThirdPartyClient |
Version | 1.24.1 |
In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
License | Artistic-2.0 |
Depends | |
Imports | methods, httr, png, Biostrings |
System Requirements | |
URL |
See More
Suggests | RUnit, BiocGenerics, knitr |
Linking To | |
Enhances | |
Depends On Me | Hiiragi2013, PAPi, ROntoTools |
Imports Me | ADAM, attract, CNEr, EnrichmentBrowser, FELLA, gage, KEGGlincs, KEGGprofile, MetaboSignal, msPurity, MWASTools, pathview, PathwaySplice, RnaSeqSampleSize, YAPSA |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | KEGGREST_1.24.1.tar.gz |
Windows Binary | KEGGREST_1.24.1.zip |
Mac OS X 10.11 (El Capitan) | KEGGREST_1.24.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/KEGGREST |
Source Repository (Developer Access) | git clone [email protected]:packages/KEGGREST |
Bioc Package Browser | https://code.bioconductor.org/browse/KEGGREST/ |
Package Short Url | https://bioconductor.org/packages/KEGGREST/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.9 | Source Archive |