DropletTestFiles
This is the development version of DropletTestFiles; for the stable release version, see DropletTestFiles.
Test Files for Single-Cell Droplet Utilities
Bioconductor version: Development (3.21)
Assorted files generated from droplet-based single-cell protocols, to be used for testing functions in DropletUtils. Primarily intended for storing files that directly come out of processing pipelines like 10X Genomics' CellRanger software, prior to the formation of a SingleCellExperiment object. Unlike other packages, this is not designed to provide objects that are immediately ready for analysis.
Author: Aaron Lun [ctb, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("DropletTestFiles")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("DropletTestFiles")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DropletTestFiles")| Test files for droplet-based single-cell utilities | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData |
| Version | 1.17.0 |
| License | GPL-3 |
| Depends | |
| Imports | utils, ExperimentHub, AnnotationHub, S4Vectors |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, DropletUtils |
| Linking To | |
| Enhances | |
| Depends On Me | OSCA.intro, OSCA.workflows |
| Imports Me | |
| Suggests Me | DropletUtils, TENxIO |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DropletTestFiles_1.17.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/DropletTestFiles |
| Source Repository (Developer Access) | git clone [email protected]:packages/DropletTestFiles |
| Package Short Url | https://bioconductor.org/packages/DropletTestFiles/ |
| Package Downloads Report | Download Stats |