iASeq

This is the development version of iASeq; for the stable release version, see iASeq.

iASeq: integrating multiple sequencing datasets for detecting allele-specific events

Bioconductor version: Development (3.21)

It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

Author: Yingying Wei, Hongkai Ji

Maintainer: Yingying Wei <ywei at jhsph.edu>

Citation (from within R, enter citation("iASeq")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iASeq")

iASeq Vignette	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ChIPSeq, ImmunoOncology, RNASeq, SNP, Software
Version	1.51.0
In Bioconductor since	BioC 2.10 (R-2.15) (12.5 years)
License	GPL-2
Depends	R (>= 2.14.1)
Imports	graphics, grDevices
System Requirements
URL

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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iASeq_1.51.0.tar.gz
Windows Binary (x86_64)	iASeq_1.51.0.zip
macOS Binary (x86_64)	iASeq_1.51.0.tgz
macOS Binary (arm64)	iASeq_1.51.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iASeq
Source Repository (Developer Access)	git clone [email protected]:packages/iASeq
Bioc Package Browser	https://code.bioconductor.org/browse/iASeq/
Package Short Url	https://bioconductor.org/packages/iASeq/
Package Downloads Report	Download Stats