UniProt.ws
This is the development version of UniProt.ws; for the stable release version, see UniProt.ws.
R Interface to UniProt Web Services
Bioconductor version: Development (3.21)
The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.
Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre] (ORCID:
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
citation("UniProt.ws")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("UniProt.ws")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("UniProt.ws")| UniProt.ws: A package for retrieving data from the UniProt web service | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, BioCarta, GO, Infrastructure, KEGG, Software |
| Version | 2.47.1 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
| License | Artistic-2.0 |
| Depends | BiocGenerics, methods, RSQLite, utils |
| Imports | AnnotationDbi, BiocFileCache, BiocBaseUtils, httr, httpcache, jsonlite, progress, rjsoncons |
| System Requirements | |
| URL | https://github.com/Bioconductor/UniProt.ws |
| Bug Reports | https://github.com/Bioconductor/UniProt.ws/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | dagLogo, drugTargetInteractions, ginmappeR, immunogenViewer |
| Suggests Me | autonomics, cleaver, qPLEXanalyzer |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | UniProt.ws_2.47.1.tar.gz |
| Windows Binary (x86_64) | UniProt.ws_2.47.1.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/UniProt.ws |
| Source Repository (Developer Access) | git clone [email protected]:packages/UniProt.ws |
| Bioc Package Browser | https://code.bioconductor.org/browse/UniProt.ws/ |
| Package Short Url | https://bioconductor.org/packages/UniProt.ws/ |
| Package Downloads Report | Download Stats |